Protein Info for mRNA_3557 in Rhodosporidium toruloides IFO0880

Name: 11925
Annotation: K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 PF00282: Pyridoxal_deC" amino acids 161 to 453 (293 residues), 68.4 bits, see alignment E=7.6e-23 PF01041: DegT_DnrJ_EryC1" amino acids 203 to 317 (115 residues), 24.7 bits, see alignment E=2.2e-09 PF00266: Aminotran_5" amino acids 205 to 374 (170 residues), 32 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: K01634, sphinganine-1-phosphate aldolase [EC: 4.1.2.27] (inferred from 53% identity to scm:SCHCODRAFT_69476)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.2.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_3557 K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase (Rhodosporidium toruloides IFO0880)
MAPAASNTVMDAIRSHVLTVETAKTLVFWTLVCRHFVRIVRHLRARGLLTAAREAYLATV
QRGFGLMMLLPSMRNKVAGELDKVTLELEEKLAPKHPDAPSFRSLPDKGLSAEDVSTALT
KMSELPNTKWENGRVSGAVYHGGKDMGEIWKEAFGKFEVANPLHADVFPGVRQMDAEIVS
MCLSLYNSPLPASTIDEYGGAGTTTSGGTESILMACKAYRDRARAEYGITEPEMIVPISA
HAAFDKAARYFNIKIHHIPVDPKTRKVQIKKVRRAINPNTILLVGSAPNFPDGAIDDIQA
LSDLAVKYRLGLHVDCCLGSFLVPFLERAGYQTVPFDFRVPGVTSISCDVHKYAMAPKGA
SVIMYRSKALRKYQYEVITTWPGGVYATPSMAGSRPGAILAGAWASLVHMGLDGYTASCH
SIVGAAKRIVHGIRKDFPELYVLGDPLVSVVAFGSKTEGQGNGLGKVPIYEVGDRMSKMG
WHLNALQNPPALHIACTRLTVPVVDDLLRDLRAAVDEVQAMEEAGKGSMVMLYGLGSSSA
VGAGLVGEMASRYMDVLYA