Protein Info for mRNA_3558 in Rhodosporidium toruloides IFO0880

Name: 11926
Annotation: K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 PF00270: DEAD" amino acids 115 to 298 (184 residues), 128.6 bits, see alignment E=4.7e-41 PF00271: Helicase_C" amino acids 428 to 525 (98 residues), 87.2 bits, see alignment E=1.9e-28 PF08147: DBP10CT" amino acids 859 to 908 (50 residues), 64.1 bits, see alignment 2.2e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>mRNA_3558 K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10 (Rhodosporidium toruloides IFO0880)
MDSDSDTQVDISSALLGPSTSRKPTKTARTKPSTSSKPATAAATDSGDEDAEDALFASLA
SLQHSRNLSEGAALVRKGKDAKQSKGLTGGGSFQSLGLPPLLLKALLQRGFTTPTPIQRL
ALPSILGSTESIVTDKGKKVTVARDHLCMARTGSGKTLCYLLPLLATLWTHSDKFGARGL
ILVPTRELALQVLKVGKDLARGIKGEGEALRWAMIVGGEGMESQFELMAGNPDIIIATPG
RFLHLLVEMSYSLSSIQSLIIDEADRLFELGFAEQLHEILHRVPATRQTLLFSATLPSSL
VGFAKAGLQNPKLIRLDVDQKISKDLRMAFLEVKSSEKEAVLLGLLREVVRVPVMTEQQR
VEENARVKRENEAVMNGEGERRGHSHGHGSGGRGKGKGRGFGDDRGKKRKRGAEEDDDEK
DKVNGAEVAPHQTVVFVSTKHHVEYISSLLSAAHYAVSSIYGSMDQTARKIALSRFRSGQ
TSILVVTDLAARGIDVPGVENVVNYDFPNGTRNFVHRVGRTARAGRTGWAYTFVTASDVP
YLLDLELFLSRPLKTCPLDSTDSAAEPDYSHTLILGTPPRALTDLDLETHRSLLTHHPHL
ETLAGVAARGQKMYERGLGKASPESYRRAKEMGRAKAERAAKAGRGEGGAVGEEHPVYAE
VGAGASGEEGGKVKQTERERADLLAKISGFRPPETVFEVTAKGKNGGSDGSIAQLMKERR
KAILKSERARELVKAVGEEELPALPEGAERDEDEEMEVAEIEQPKRPAKVDLDEADEEEL
EAVFGKKPAKRAKQSEGGSGKSWRDDRFFMGYEQEGAATEAGYTLTNGESFVAQAAHSTY
DIAGHGDTEGTPAELLAQRASTLKWDRKSKKFVRADQVGADNKKLIRGESGQRLPASFKS
GVFDEWRKNTRISVPRVGDQEIKGRTVQGGKRFRHQGAAPKESSEGGASGGKGKAAKRRV
GKAGKPGSAPGGLKTAAEIRKERIAKEKRVRRSNQPSKKKPKGKAGPASGSMGGGGGGRR
K