Protein Info for mRNA_3559 in Rhodosporidium toruloides IFO0880

Name: 11927
Annotation: K18622 ADD adducin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 PF00596: Aldolase_II" amino acids 55 to 237 (183 residues), 153 bits, see alignment E=4.6e-49

Best Hits

KEGG orthology group: None (inferred from 45% identity to afm:AFUA_3G01330)

Predicted SEED Role

"Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>mRNA_3559 K18622 ADD adducin (Rhodosporidium toruloides IFO0880)
MAPDAAALSQPPHSGTRQDQDAESFGFESDADLKRMVTPPKFDSLEEERQYLKERIALAC
RIFAQYGLDHHIAGHLTVRVPGEPDSFYVNPFSRSFKLMDAEDIITVSHTGDVIGGGKPG
RRVVNKAGFLIHSSIHKARPDVQAICHSHSTYGKAWSTLGLPLEYTTQDSCAFYGRQSVL
DSFGGVVLSKSEGARIAEKLGEGVLVVLQNHGLLTVGHTIDAAVARFILAEEQCRVSLLA
HGAAQSLGTKVIQIADEEAKFTSNQGEEPIAYFMASGYFEVAEHLWGEEVRAKRN