Protein Info for mRNA_3566 in Rhodosporidium toruloides IFO0880

Name: 11934
Annotation: HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 PF04664: OGFr_N" amino acids 46 to 239 (194 residues), 161.1 bits, see alignment E=1.4e-51

Best Hits

KEGG orthology group: None (inferred from 44% identity to scm:SCHCODRAFT_14945)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>mRNA_3566 HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664 (Rhodosporidium toruloides IFO0880)
MTRPLSTSSNSESILAQLKRRNIPSSLPRDIISFLLHYPSQPANPKRNANLLFYQNQHPA
RPRRSNCEELQDVLRGNWDELEGRHDFVQWFFPIREQGVNWDAQPLELHEIEGIKSDPSA
MSRFLESYRIMLAFYGLTLVNPQTGELALQDDVPAPHPSSYLRRLRNLEERSDNWLRVTR
ILKCLEELGLTPHAPSLLLFLLTLQSPPHSLLTSPALCRSMDSYWRWCVRDDEDREFVAE
VVERVRSGGTWSEEEYREWIRKRTEEKEENGVAETNGAKEENGNEEANGAGEKL