Protein Info for mRNA_3567 in Rhodosporidium toruloides IFO0880

Name: 11935
Annotation: KOG1760 Molecular chaperone Prefoldin, subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF01920: Prefoldin_2" amino acids 20 to 124 (105 residues), 73.5 bits, see alignment E=6.5e-25

Best Hits

Swiss-Prot: 40% identical to PFD4_YEAST: Prefoldin subunit 4 (GIM3) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K09550, prefoldin subunit 4 (inferred from 49% identity to ani:AN0862.2)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>mRNA_3567 KOG1760 Molecular chaperone Prefoldin, subunit 4 (Rhodosporidium toruloides IFO0880)
MRMLEKDDPSTDVPVTKVDQDRINQFSRLNSRTDEIVDVLDGLRKQKEDLEEIETEMELV
DEDEVVMYKLDTTFVHIPASEALEHLQSHSEKIKKEVGELEEEKAKCEETMDDLKKELYA
KFGNSINLEREDD