Protein Info for mRNA_3579 in Rhodosporidium toruloides IFO0880

Name: 11947
Annotation: K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 PF17681: GCP_N_terminal" amino acids 1 to 243 (243 residues), 218.8 bits, see alignment E=1.4e-68 PF04130: GCP_C_terminal" amino acids 246 to 570 (325 residues), 251 bits, see alignment E=2.1e-78

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>mRNA_3579 K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3 (Rhodosporidium toruloides IFO0880)
MVEQSLGAEVRREMTEYFRLVARLEAKLEGVQQEEEGDEDGEGLGEGLTLRKLDVWTRDV
RLRMRMMATLVSDIAGRSSSGSETSPLSHLHAYTTHGDPFISQFSSHLLSTLSTPFFTTL
RAWIYAGELQDPHGEFFVVPASKAEGEGEGGEVASHELWKGKFVFREEVVPSFLGEAVAR
KIFSTGKSLNFMKYSCDDAAWVMERSHADQPVLRYTDMSSLEHSISLAYIAASRRVFELF
FDKFRLMDHLQALKDYLLFGKGDFVEILIEQLGPSLKRPANTLYRHNVTSALESAIRGST
PPGSAALSNVLQRLDARVLDSEQGLIGWDVFLLEYKVDAPLSTILDPASLDDYRALFKHL
WMIKRVEYTLNECWRTLMTKMRLLKKGSDLAFVLHQTRITLSEMIFFVRQVESFCHLEVI
ACQWSDLEDFIAKKEGDLDKLVDAHRRFLGKLVEKALLKPQGRRKKETKPLIDQLRDVFR
VMLVHVAAAEDLYAFSMQYESYARAAASTARGQPPLAIQRPTTAQLENLEERLASSGAAF
REQAKDLVVALDRSPDLDLRFLAVRLNFNYQFRPDPSSTRSEV