Protein Info for mRNA_3593 in Rhodosporidium toruloides IFO0880

Name: 11961
Annotation: K06978 K06978 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 TIGR00976: hydrolase CocE/NonD family protein" amino acids 63 to 227 (165 residues), 143.8 bits, see alignment E=4.8e-46 PF02129: Peptidase_S15" amino acids 66 to 235 (170 residues), 123.9 bits, see alignment E=9.3e-40 PF08530: PepX_C" amino acids 341 to 589 (249 residues), 113.2 bits, see alignment E=1.8e-36

Best Hits

KEGG orthology group: K06978, (no description) (inferred from 54% identity to pcs:Pc20g06580)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>mRNA_3593 K06978 K06978 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MPTTFTIATKPIDKPTIGVNGYDGFHPGKTTRLEKGSTREGFAGERTRPLESDILLEHDV
ELVMRDGAKLYCDIYRPADSDEKIPCLIMWSPYGKRYSSINMLPVTTWRCGIRSSDLSGW
EKFEGLDPATWCPRGYAIASIDTRGAGNSDGSVQIMGQNMGEDGYDVVELLAKKDWCNGN
IGMAGNSFLAISQWHIAAQQPPSLKAIAPWEGCGDLFREQFVRGGVFEISNMDLINKLII
KGNNGTEDFFEMYEREPLHSPYWADKRADMTKIKIPAYISGSDFSSIHTMGSIRGFWECQ
GPKWIRWSGIQEWHDLYCVKESTEELLEFFDHYLKGKENDFVAKTPKVRWALLQGGDRDA
IENVEIPDFPLPNTDYRDHFLAADGKLAESAPSQASTVSYVSRGEGKGVVSFDIKFDKKT
QLVGIPKAILHMSTDDHDDMNVYVTLKKLDKDGNTLMHQTVPRNRAWAPTQAKIEPKDRT
SLLLHPGSLGVLRASHRHIDASKNVHPNWPWHPHTFEEKLKPGEIVRLEIGIWAMGWTFD
EDEGLRVEIGGGHDMNHEIRHFSTKSVPEESLNKGVHKVHFGGEYDSKVILPFVNIL