Protein Info for mRNA_3601 in Rhodosporidium toruloides IFO0880

Name: 11969
Annotation: K11367 CHD1 chromodomain-helicase-DNA-binding protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1615 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00385: Chromo" amino acids 315 to 355 (41 residues), 29.7 bits, see alignment (E = 1.4e-10) amino acids 394 to 451 (58 residues), 45.6 bits, see alignment (E = 1.6e-15) PF04851: ResIII" amino acids 497 to 649 (153 residues), 32.9 bits, see alignment E=2e-11 PF00176: SNF2_N" amino acids 503 to 765 (263 residues), 195.1 bits, see alignment E=4.5e-61 PF00271: Helicase_C" amino acids 792 to 902 (111 residues), 67.7 bits, see alignment 3.4e-22 PF18196: Cdh1_DBD_1" amino acids 1113 to 1221 (109 residues), 31.1 bits, see alignment 7.8e-11 PF13907: DUF4208" amino acids 1396 to 1490 (95 residues), 91.5 bits, see alignment 1.1e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1615 amino acids)

>mRNA_3601 K11367 CHD1 chromodomain-helicase-DNA-binding protein 1 (Rhodosporidium toruloides IFO0880)
MDPSLILSASIGSTAGAPSSSSAAYPPGRVPPPPPPPLPPAIDPALVAVKAETPQALEDV
PMSESEGSDYDAASSSRATGAIKVDSTATSVKDEPMDEDEDDAEGDDGEYKEDVKDEESV
DDDSDGVVAPGHAGRSAASTSRSSKKPRGKALPEDFDPELFLLRRSGRASTARTQKTYDE
NDSDMSSSAMPSRSRNKGKSRASSAMSRTVRDSSEDESSEDDDGDYIQNKKKHVKKRRGG
KKRTARDFELPRVSSRNGKALPNYNEAEMFSDLSDSDDGYEYEYTEEQEPDDDGIDGVFA
HKRAPDHADDKDDHPQRNMLFLVKWQNYSHIHDTWETYEHLKRFRGFKRLENYIKQVFWP
QHNLLKDSKLSREDLEAVHLERERQAEQLENYKQVERIIAERDAAANDEIDHDHVEYLCK
WKGLQYSDATWEAHDTIKDIAADQVADFLERMSSSCLPHKSANYSKSRPTFKKLTAEPEY
ISKCGTLKDFQMTGLNWLAYLWSRGDNGILADEMGLGKTVQSCSFLSYLFHEQQQYGPFL
VVVPLSTLPAWQAQLAHWAPDLNTVAYIGNAASREMIREHEFGSRTKPHFNVLLTTYEFA
LKDKEQLDVFKWQYLMVDEAHRLKNSESALYMALKEFDAKAKLLITGTPLQNNVKELLAL
MHFLHSDRFELAGEFDLNDEENEAKIRDLHGKLESIMLRRLKRDVIKELPTKSERILRVE
MSNMQTWWYKNILTRNYAALSGTENSVSLLNIAMELKKASNHPYLFEGAETRTDSREETL
KGLVMNSGKMVLLDKLLQRLKQDGHRVLVFSQMVRMLDILSDFCALRGYLYQRLDGTVPS
EIRRKAIEHYNAPDSPDFVFLLSTRAGGLGINLETADTVIIFDSDWNPQNDLQAMARAHR
IGQKSHVNVYRFVTKDTVEEDVLERARKKMILEYAIVNQMDTSGKNIGQVQPTKPENYTR
EELASILKFGAANIFKSDGAQSKLEEMDLDDVINNAESYETATAPTGTSLGGEEFLNQFA
VQDVKADMTSWEDIIPAEDRERVKAEMAEEEKKAAAEAESTRRAAAQVAPGAYKGKDGTP
ASRESSPGSPRGSKKDKKPAAPRKTDAQRAQELKDRDIRTLIRGFNRFGDIRHRYDAIVK
DARLESKNRTVITQTIDELLKLCRDEIQKKKDMLEEMKEKGEDIPNKLKNQAVLVSFRGV
DKINAETVVQRAEELEILHSYLKKASDPLKWKFPVDNVKSNSGWNCEWTAEDDAHLMVGV
WKYGHGCWEAMRDDESLGFKDKFFLEDAKNKSKDEKARIPNAIHLVRRADYLCHLLHDLD
GSGRSDNKPSGSKTHQPRAGSSAPRPKSSQSKDDTASVAGSTSSKTHKSSSSKPAKSVKR
KATPEYSDSEEDAESSYDSMDEESCKEALRPVKRELKRLKQPTTDMSREEKLAHLKDTLT
AIGARIEVVADFEKSSSAKEKKRKHLWKWTSFFWPNQAIKSQQLRQMYDHLAGAKDSPVP
SPALPPAQPAPPKPPRPADEQPPPAKKPRTTSGTDLPSFSRLPSARPSASSASPLPPPPP
PPPAPLASSSYARSPQSYSNGTPSHGYQPSPQYRQSSYGSSSSYPSHQQYPHGQR