Protein Info for mRNA_3602 in Rhodosporidium toruloides IFO0880

Name: 11970
Annotation: K10839 RAD23, HR23 UV excision repair protein RAD23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 TIGR00601: UV excision repair protein Rad23" amino acids 2 to 402 (401 residues), 373.5 bits, see alignment E=7e-116 PF11976: Rad60-SLD" amino acids 3 to 71 (69 residues), 32.6 bits, see alignment E=1.1e-11 PF00240: ubiquitin" amino acids 4 to 74 (71 residues), 73.3 bits, see alignment E=2.3e-24 PF00627: UBA" amino acids 154 to 188 (35 residues), 52.6 bits, see alignment 6.7e-18 amino acids 359 to 394 (36 residues), 44.9 bits, see alignment 1.6e-15 PF09280: XPC-binding" amino acids 268 to 323 (56 residues), 79.9 bits, see alignment 1.8e-26

Best Hits

KEGG orthology group: K10839, UV excision repair protein RAD23 (inferred from 43% identity to lbc:LACBIDRAFT_247017)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>mRNA_3602 K10839 RAD23, HR23 UV excision repair protein RAD23 (Rhodosporidium toruloides IFO0880)
MVRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQGFPAESQKIIFSGKILPDEKTVGEA
NFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGPAA
PSSAPAATEAETPAPAANQPADEATSFISGSALETSISEMVAMGFPREQVQRAMRASFNN
PHRAVEYLMTGIPDAPAAAEPAAAPAAANPPGTPSPASGNAAPLAATPAPAAAPANAPRN
LFEAAAAARNAPSAPAAATGGAGASPELAALRSNPVFGQLRSLVQQNPALLQPFLQQLGA
SNPELLSLIERNQQAFVEYLQEGLGEGEGLDALLDQFGDDGDDEGGMGGGQYIQVTEEER
AAIQRLVAMGFDEQMAIQAYIACDRNEELAANMLLENGFDFDD