Protein Info for mRNA_3617 in Rhodosporidium toruloides IFO0880

Name: 11985
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 376 to 397 (22 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 433 to 457 (25 residues), see Phobius details amino acids 486 to 508 (23 residues), see Phobius details amino acids 528 to 548 (21 residues), see Phobius details PF07690: MFS_1" amino acids 59 to 453 (395 residues), 62.6 bits, see alignment E=5e-21 PF00083: Sugar_tr" amino acids 87 to 229 (143 residues), 49.2 bits, see alignment E=5.8e-17 PF06609: TRI12" amino acids 106 to 280 (175 residues), 57.6 bits, see alignment E=1.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>mRNA_3617 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MDKPSVQHLERHLPEGVHVHDSYAVDETNTPVTVIGTMGQDPDEKQSISWKTWIIVALCC
LAQMQNTFLGIAPAANAYTIAGVLGADSSKRIWIVQAQGVPSIVTGPIMAIISDVYGRRY
VVLFAWLLFCVGAIVAMTANNVNGVIAGQALNGVAAGISGIMYAIASEVTPSVYRAWVQS
VVNLASSTAAILALIAMTAASQADAVNGWRWVFRTMLLFDGILLLGFGFFYHPPPRTATR
HTLLQKLASLDWIGYFLLIAGLVPLLMGFAWSSDSTIGWHDPHCTLASRLEWKGTTTGFL
DHRLFQHGRNFPLSLFLIAVEGSLFYLVNNIYSSEVNGLWAMPGTMDASARLLPFFLVIF
AVAPVMSWYVTKYKDLKWPLCAGFLCFAVATIGFAMSGTNGNMATAFNAVGGIGFTAPLT
LLITLVQLSTPPLFIGIASALTISVRTLGGVVGYAIAEAIYGSLTNTQIPENILKAVIPM
GFNPQYLGPLIGFLMSGQGLAAIPNITGPMIGAASAALKETQAHAYKIVWFAFLPGSILA
AIGCAMFHNPKERMNWVTDAPLDTKNIGAHHDREAHADSESSAEQEKVAV