Protein Info for mRNA_3632 in Rhodosporidium toruloides IFO0880

Name: 12000
Annotation: HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 PF07714: Pkinase_Tyr" amino acids 484 to 542 (59 residues), 25.4 bits, see alignment 8.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (624 amino acids)

>mRNA_3632 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112 (Rhodosporidium toruloides IFO0880)
MLHSGQAAAPSPQAPPRPPRLTLQIASPLASTSSTFISASCGTSDYAKPPSPIKPSRNSL
FDLDWAPVTPHTRSRSSTTESQFSATSSAGTTASSKSWMDVDISPPPSISHSSLPPPIPT
FSRSDTAKGWQAWERTPVPGKSEGGFEWTAQAASAPQENVLGPPFTSVPLPQASPSLAEP
PRPPPPLPARTFSSILPPSPPSPIHSSSYSFPPSFAYDESGILPPTAGHSSNPLLDTRQA
PPLRLSPIPLYSLGEGRHATVYLASFVPQMRDGQVRAEKRRRLCAAKRLLPDRESQVSGL
GEAFILAKLSQADSNSAAAGGSRYILGLYGVRDERDGIDPPAPLPASPSSASVSRRASQR
WSYGGAVGSGSGSGTLSPLGKETFAYGTDNAEATSREDKRRSLPLQERPKKGKARHSDML
PGTSSPSGRLSLLSHALEPPLTSTRRRTTLGGGPATTSTTPSQSPPTSLAPSPLPHPASP
RNDLLVEYCPFGHVLQFAKSHPERIGKRRWFEWALQISSAVEWAHEKGVLHADLKPQNVM
VRPSLPLWRLRWLRLVCAGCCRPYAASLRLGQLALPPSPFFSRTPLPDRSARPRHTRLLT
SRVCPPAALPFLLLQRHLLARHHA