Protein Info for mRNA_3642 in Rhodosporidium toruloides IFO0880

Name: 12010
Annotation: K08818 CDC2L cell division cycle 2-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 PF00069: Pkinase" amino acids 102 to 387 (286 residues), 217.2 bits, see alignment E=2.9e-68 PF07714: Pkinase_Tyr" amino acids 106 to 296 (191 residues), 100 bits, see alignment E=1.5e-32

Best Hits

KEGG orthology group: K08818, cell division cycle 2-like [EC: 2.7.11.22] (inferred from 67% identity to lbc:LACBIDRAFT_300809)

Predicted SEED Role

"Alpha-N-arabinofuranosidase (EC 3.2.1.55)" in subsystem L-Arabinose utilization (EC 3.2.1.55)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.22

Use Curated BLAST to search for 2.7.11.22 or 3.2.1.55

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>mRNA_3642 K08818 CDC2L cell division cycle 2-like (Rhodosporidium toruloides IFO0880)
MSDQPPRKKSKWDDDEEEIAQERERRRAQKLAARLMSEKEQLERSHERGATDSPRGSGRS
SVESTPRRAAWDDDGSARLRKVPRRGREAHPLLESCRSVYCYERLNEIEEGSYGIVFRAR
CKSTGDIVALKKLKMDKEKNGFPITSLREIQTLMTVPHENIVRVREVVVGDTLTQVFIVM
DFIEHDLKTLLANMPTPFLASEIKTLVMQLLSAMAACHDNWVIHRDLKTSNLLMNNRGQI
KVADFGLARTYGDPLGDMTQLVVTLWYRAPELLFGATEYTTAVDMWSIGCIFGELILREP
LLPGRGEIDQVNKIFKLLGRPTDELWPGFRKLPNAKSFNIDAAQPYSTLSRTFRYLTQSG
LDLLSRLLTYDPAKRITAEEALKHAYFEESPLPKDPGLFNSFPSVASGEKKTTLASPSAP
QAGGGYDFV