Protein Info for mRNA_3649 in Rhodosporidium toruloides IFO0880

Name: 12017
Annotation: HMMPfam-Protein of unknown function, DUF604-PF04646

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF02434: Fringe" amino acids 275 to 343 (69 residues), 28.2 bits, see alignment E=1.3e-10 PF04646: DUF604" amino acids 324 to 490 (167 residues), 47.4 bits, see alignment E=1.8e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>mRNA_3649 HMMPfam-Protein of unknown function, DUF604-PF04646 (Rhodosporidium toruloides IFO0880)
MVTLPTGHRFRLHMRHLIAFLCLISFTIYYFSSPPSTTTSARFSPSQAQTAKLLSYCPHS
TSRKHIPTVVLQGTQTVAPDANRTVLVLEQPGDQPAPFLPYAYPPRELRFAQTVSVQDEA
KRRPGAGRLNDGVNSDDERGQQLCKVHRVASSPRPPVPEGWKNSSVMFGMSTTPDRVLAN
LPVWSHWIPSAKPPPLDPSVKAMTAKLPLVLVLTPPQNPTETARAREAMEEANGMGMFVE
MRPREAERFETRYFALAEEMWEEAKRREEEDGIRTDWFIFSDDDTFFPDFDSLAHLLGSY
DANGDWLIGTLSESTKQVAQWGHIAYGGAGILVSRGIMRRMNEEGVWNRCLAKFGASFGG
DAMVTHCAALVMDKSAEDALTLEPTLHQLDIRGDGTGFFQSGFLFTSLHHWGSWFTLFPP
WHESGAGDLRKGITLVGKAAKAVGGDNWGRRYVFEGGKVVVALGYSVTIEAKPLTQAELD
KSEHTWWEFETFHPIRPGQEEALDKRTYYVTGVRQLDAAGIYRIEHKNREGERVDIIWDQ
RDTKPKKHGWFS