Protein Info for mRNA_3662 in Rhodosporidium toruloides IFO0880

Name: 12030
Annotation: KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 PF01873: eIF-5_eIF-2B" amino acids 44 to 117 (74 residues), 72.2 bits, see alignment E=1.7e-24

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 2 beta subunit" in subsystem Translation initiation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (117 amino acids)

>mRNA_3662 KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta) (Rhodosporidium toruloides IFO0880)
MALQSGTIAKAWLKEDRNYTYTELLGRFFSLLYQLHPSLSHGAGKKKYTIPRPQLFREGN
KRSIFANIADLCKRMHHQPEHVTQFLFAELGMNGSVDGSSRLVIKGRFQQKQIETVL