Protein Info for mRNA_3668 in Rhodosporidium toruloides IFO0880

Name: 12036
Annotation: K08870 TWF twinfilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1245 transmembrane" amino acids 851 to 868 (18 residues), see Phobius details PF00241: Cofilin_ADF" amino acids 28 to 148 (121 residues), 45.1 bits, see alignment E=8.7e-16 PF00787: PX" amino acids 812 to 921 (110 residues), 56.9 bits, see alignment E=2e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1245 amino acids)

>mRNA_3668 K08870 TWF twinfilin (Rhodosporidium toruloides IFO0880)
MAAQSGIAPTQELTDLWTNALADPQTRLVKIIIKDEQLVPSGTFTSTSPTSNSGDEDATS
DAAFAEDFTLFDQDGVVEEKVPAYYAYRISPPPASTFAFFSYVPDHAPVRQKMLYASTQN
TLVKFLGDSRLPVSIFATSTSDLTHASYLSHIEHSTASAPLTAREAEMASVRAAEASEAA
SSRGTDKPPAQQPSILSPRSPTSPHPPASVPTLRLPTAPPVPPKPLYLSTARRIRGGEVD
EDGRSEGRLRGGRRGALPDRWSVMTAEDEVPVHVNGEGTGQAAHAAQQDYEKDGDAEESV
ADEGTVRLAKSVDEASKVAGEDGSAATDAAAKLTLAALFDSVDKPDSPTPSLPRPRSPST
TSTDSQQTEAFRTPVGTLRAGSTIKVRAKDGRQSIYFDPSSTNPFLPSSSALLPAPPSDD
AAYPTTETSDVDVVLPSDFPLLALPSSSSPAIALHAFTGQGDFGELSFPQGDSLRIEVED
VGGGWSLGFVESEGEAKRGLVPRGWYAYVDGLSKSPPLPAESPSPGAPAVHDSARSATSD
TSDCTILPTTNPPVQHSLAVDSSEPHATRSIGRHVVVSGTEFEPTWVADGDKIGAVDLEE
QIGSESSAVLEREVEKAQVPLHAEDLTRSSDSGKASKVDVDAVSSAQADRDASLDHTATP
TRPPPPAIPAPVSQSFLFRIGLAPFFDTSASSSTLSRFLPALGRTPIPGASILAATSASS
SLAAALSSTKPRLPRLETHRASKLPDGRTLLLRWVEEGDELDEAVEYGENGEGSVQCFDI
DSGPAWRRRGTDEDGGRAEVFVTEPKKCSPLNESPFVVYTVLMSFPTVATEPDDDAATSQ
TLCVDRRYSHFAALHTLLVSRFLAPLIYVPPLPLKGPLAFGAARFDPALLERRRKELERW
LRRCLRHPVLGESEEMTGFLAIEGEKELSAHLLLATPRPPPPLQPLFPARVFHPAFNIDL
SEAEDVCDRFERHCKAVELGGGVRGVAEPLRMEREQERSSANTLQQLAHSLVRLASGSAL
PPTSYDTGIPSLAAGEAGANGDRRTRAKGWSLQNEAGALSWKEDDEPLGVSKALQAAGEA
CADVADLGDTAARTSLLDVEERLLSVSAPLSQYTPLIELHRSLVSTYRRLARLSGINPSV
SDQLARCETALNITSAEMDRVRLERTEDLAEAVKGWLEEKISVHEQSLGHLRFALDHFSP
SSLADLALTGPRLRSRLETADGPLAYPPLPRAGVYERDSGGSAWR