Protein Info for mRNA_3691 in Rhodosporidium toruloides IFO0880

Name: 12059
Annotation: K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1202 PF00581: Rhodanese" amino acids 490 to 611 (122 residues), 27.3 bits, see alignment E=6.8e-10 PF13423: UCH_1" amino acids 849 to 1170 (322 residues), 50.9 bits, see alignment E=2.7e-17 PF00443: UCH" amino acids 850 to 1198 (349 residues), 223.3 bits, see alignment E=5.8e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1202 amino acids)

>mRNA_3691 K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8 (Rhodosporidium toruloides IFO0880)
MAVASQTPPTPLAELRRRSHDTLANLRPSEYSIRAWSNTARVAFETAERCWREGQRTQDP
RKVEEAFLEYKRAAGVMHLILKHPDYHRMVSTKSPEYYTFVSLRGLATEAKAPNDQVVRW
LENREAEWTRDHAKAETRVGKSNGAERNELERAPEPAASTSRPAPQKTPSFPTATLADRL
AALRASGLPGATSNVSQAAPPSQPPQPSPPLRPSTPPRQSSSRTLRQSAVPLSPTSSPRA
ETGDLVADDAVERTGSAPPILPMSDVQEPATVWEDSAVQFRQEGGVPIADAERGVLDRGP
AGGVGIAPEGRGALSDLSDLPSPTRFMSAFPSVDDLERRVEQSRPTSDSSAASSSFSFPS
VPSFDPSAAPAKPARPPPPTPRSPRVDATTAASPPQGDFARLAADFERTSIAPADNRLSR
NDLPPALRPGGRQPPPIVSPSVPSTTPTASPLPPPSSASKSFKIPFSAEVRPLELWQYLQ
TAQSETGRGPRVLLLDVRSRDEYNRGRIRGETVCLEPLALRDGIRSTDIEDALSLAPPHE
AALFSARNHYDIVVIYDRSSATLPNTAPPSTSSDAQRTLWNLVNAIYEREFTKSLQRQPI
LLRGGWEAWEKQVGPNGSVGRGIARASGHSVDDAARDAKKANRRAAVMPGDGLVMRNGHG
EAAYGPPPTHSIQPYPSTSNHVLSPRLAMPPAVAQRSGSAPAYDPFAPSPPVTSRPSYSQ
APLNGFTESISPGMHYPTPRTLADHSDMYRPSPSSASPYAGSNYSRTSFDYARPSIDYPQ
LQPRPAPPVTQATRPPPPVPAVARPPPAKPAPLRSNSSFSSMQPAQYSSAHSRFPTSMLS
FDEGVIGISGLKNLGNTCYMNSTIQCLSAAIPFARYFTGGSYRKDINTVNPLGTKGALAN
AVAELIRALWAQQYHFLSPVTFREAICRVAPQFRGSDQHDAQEFLGFLLDGLHEDCNYVL
KKPPPIEMTPDREHDLETLPAQVMSEREWQIYKMRNDSFIVRLFQGQFRNQLRCLTCQKT
STTYNTFMPLSVPIPGGRGIHKVSLMACLEAFVRDEVLDKDDAWHCPRCKKNRKAIKKLS
LSKLPPILVIHLKRFSFHGPFSDKLETQVQYPLAGLDLTNFLPPPLVDKTGQPIYPGPPN
GYVYDLFGVTNHYGNLSSGHYTAYVRSGKEWNNIGDSKVTPCDPRVVESAKSAYILYYTL
RT