Protein Info for mRNA_3693 in Rhodosporidium toruloides IFO0880

Name: 12061
Annotation: K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 PF00701: DHDPS" amino acids 12 to 297 (286 residues), 133.2 bits, see alignment E=4.2e-43

Best Hits

KEGG orthology group: None (inferred from 42% identity to aor:AOR_1_1118174)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>mRNA_3693 K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase (Rhodosporidium toruloides IFO0880)
MPSTKFGKNLPHGVYAPVLTFYKGDDEELDLETYKKHVQFVARGGVNIVALGSMGESVQL
THEERNQVVKAARSALDADSSLSQVPLIAGTGANSTKETIELTKVAAEAGADFAMVISPG
YFAGAMSRKAIKQFFVDVAEASPIPVLVYNYPGASAGIDIDSDLMAEIAAAAPNIVGCKL
TCGSVGKLTRLTTLRDDFAVLGGFIDFLGPSLLAKAAGGITGVGNIAPKTCAKLYKDTLA
ALSGQASVSSAQDLQFIISRADWALAKTGIAGAKWVLDQLEGYGGKPRRPLLPFDDADGK
GKQLLEDLKEILEVEKSL