Protein Info for mRNA_3695 in Rhodosporidium toruloides IFO0880

Name: 12063
Annotation: KOG1730 Thioredoxin-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 PF06201: PITH" amino acids 27 to 166 (140 residues), 123.7 bits, see alignment E=3.9e-40

Best Hits

Swiss-Prot: 35% identical to PITH1_SCHPO: PITH domain-containing protein P35G2.02 (SPBP35G2.02) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 51% identity to lbc:LACBIDRAFT_234830)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (203 amino acids)

>mRNA_3695 KOG1730 Thioredoxin-like protein (Rhodosporidium toruloides IFO0880)
MAPAHPPGCQCGDADAHVLLEGELNFLYKHVDRDKVVALNAEDGKEGKMVIRPWDQRTQE
EEWLESDADEQLILRVPFTGNIKLRSILIKAGPAGYTPDKMQVFANQLLDFDEASSLEPT
QTFDVPVTRDVVEPAKFPSVRSLTLFFPSNHGEDTTRVFFVGFKGEYSAFTRDPIITVYE
AQANPADHAKIPGLDTTAHSRIG