Protein Info for mRNA_3709 in Rhodosporidium toruloides IFO0880

Name: 12077
Annotation: SUPERFAMILY--SSF52540

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 PF13469: Sulfotransfer_3" amino acids 37 to 239 (203 residues), 29 bits, see alignment E=7.3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (319 amino acids)

>mRNA_3709 SUPERFAMILY--SSF52540 (Rhodosporidium toruloides IFO0880)
MSPDASFETPSIGSAASVPASSTSSSSRPSNIILWVHPRSTSTAFECMLLARPDEFEVLH
EPMGETWYYSKERVSKRFDDKICDESGHGELSYAKAWAEVAKPHPTMRKFSKDMAQYLID
TSSPNGTVAASFNGAKTTPNNPTLIPTSELLQPHISHTFLIRHPNKAVPSYARLCYPGAP
TGFDYFDPSEMGYKELRMLFDFIREKTGKTPLLVESEELLKAPSKVVKAWCEHVGIEFKQ
EMLEWDDAPETRTHFEKWKGFHDDAAKSKGIGQTTPDAKEGDKPAAPKKETTLSPELQKA
ADDCMEDYEYLRSFAKKDF