Protein Info for mRNA_3715 in Rhodosporidium toruloides IFO0880

Name: 12083
Annotation: K11713 PGTB1 geranylgeranyl transferase type-1 subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 44 to 59 (16 residues), see Phobius details PF00432: Prenyltrans" amino acids 83 to 137 (55 residues), 9.6 bits, see alignment 4.2e-05 amino acids 148 to 177 (30 residues), 9.9 bits, see alignment (E = 3.3e-05) amino acids 197 to 239 (43 residues), 31.4 bits, see alignment 6.6e-12 amino acids 291 to 315 (25 residues), 20.7 bits, see alignment (E = 1.4e-08) amino acids 337 to 371 (35 residues), 21.9 bits, see alignment 6.1e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>mRNA_3715 K11713 PGTB1 geranylgeranyl transferase type-1 subunit beta (Rhodosporidium toruloides IFO0880)
MSDAASPAAPPAAFLAKQHALFALRHAKYLPTPYQAEDASRMTLAYFCLASLALLPASTV
STADPSLSALQVLLKPTQREGFVDWVYEQQAAVGGFRGSDSLAAARHLAVEAEPSTSAFS
SLDPPNLIQTYTALLILGLLDDNFERLDRQGLLRFIGACQTSDGSFLQFPGCPEAGDPRS
TYSAFAVASMLDDWSTINVDKGLDFLSRCRRYEGGFAQQPGLEANAGPTYCAIASFKLAS
RLHDLPEPPSLLRWLLDRQVRPPPLESSDSSDEDEEAEPGGPARDPDDAAGFQGRANKPT
DACYSFWNMGALSLLLPAVSPDLSIDDVLDPALDRTWLLDCQHKVFGGIAREPGARPDVY
HTYLSLAALALGDADGKILGLRRLDAGWNVPVEVAERMRSGLWKER