Protein Info for mRNA_3721 in Rhodosporidium toruloides IFO0880

Name: 12089
Annotation: K14544 UTP22, NOL6 U3 small nucleolar RNA-associated protein 22

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1308 transmembrane" amino acids 317 to 325 (9 residues), see Phobius details PF03813: Nrap" amino acids 289 to 443 (155 residues), 77 bits, see alignment E=5.3e-25 PF17403: Nrap_D2" amino acids 450 to 596 (147 residues), 93.1 bits, see alignment E=4.6e-30 PF17404: Nrap_D3" amino acids 603 to 760 (158 residues), 141.3 bits, see alignment E=9.2e-45 PF17405: Nrap_D4" amino acids 790 to 988 (199 residues), 182.6 bits, see alignment E=2.1e-57 PF17406: Nrap_D5" amino acids 990 to 1159 (170 residues), 155.8 bits, see alignment E=2.6e-49 PF17407: Nrap_D6" amino acids 1161 to 1303 (143 residues), 107.8 bits, see alignment E=1.6e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1308 amino acids)

>mRNA_3721 K14544 UTP22, NOL6 U3 small nucleolar RNA-associated protein 22 (Rhodosporidium toruloides IFO0880)
MARSAKRTAPAATLHAAKKARTAPARRDEAAELDGDESEVNEFEGFGGSDGMMSGEEDAL
DDEDGSLEALDVQESDEEDEEDSIAGDGQDEGSDMDDQMISDDGEDLYANLDREMGDQED
EEDDEDEDEEEEQDDDGGWETVGTAPSAPLIAPAAELDKKRKAKAARKLSPAELRALAFA
ELTASPISNVLSSQVSALLDPLTPAAPSSSPLQPVLKDLHTHITNLPKQKAVSLDGLRKK
GRVVPPVEGHNGKWAKMDLAWEMPRSEDLRVTGAWAWGGGYKEMGEYVVEIAVAMPQSLL
QQKDYLFPRFSVKVAHYLVILASLLPSSLGPVTTSYFPLSGSLGYALDIRAAVKKGEEKV
GLAKAKGAVLRIRIVAPASVFPTNKLAPTGNVVRPPSLLASTEGDNPQLDPASLPPTPLH
STALHLSTLSLSTTHLKYHHSLATSYPAYTSSVRLLRNWAQRRGYDASLGLTSDWWAWCV
ARSLNVGGKSAAGDVASLAAGGEAWAGWRKAVEWLASANWTEGIWFKSMTDETYSKDEFR
RAFKGKPLFVDPTGTVNLAAGIELSTLETLKQDAKETISLLLAGIEDERKFESAFAREVR
VTERFDNFARIVVPANPKVDADAAVDHPNSLSYLVSSINSTLTRALGTRARAFRITLPAT
PPLSTSAPAPKTPSAVTLSLGLILDPSDSLRLVDQGPSAEDEEACADFRAFWGAKSELRR
FKDGAIVESVVWDEPSADGLGPQRSTIVRRIVEYILGERHGVPATNIDFFAGAMDHLVVE
PYAIRRQIYLEDSVATGKGFTNVITAFDELVKETKELPDLPLGVASVQPCSPGLRYSSTF
TPAARRLKDFERLPHSMRHIEPHDMLLTLESSGRWPDDLEGIQKIKAAFLSKIGEGLEAT
RSVLRAELVFDVDARSNDDNVALEILTATGWAFRARIFYDRSQLLLEEREEQLGDAADSS
TGASPLDLYQQRFVHAPKHHAAISTLQHHFPFFSLTVRLFKRWVSSHMLSGHFADEQLEL
LVASVFIDPATTFNPPSSGATGFARVMERLATWKWRDEPLLVPIYTFTSAVTSGRRAVLP
TTKKAQAVSNFQELRLAKPNIDEHAWVIATEEDVEGTVWGVETNKVVAVRIRGLARATSA
TLEEGVVKGGLVVEQLFSPPLADYAFLIHLDASRIPRHFQALAPEPAALASRSRSSVLSG
SMMGDLDEEDDDIRVGWDPVADFVDQLNCLYPSVFLLFHSEHGSPVIGGIWHPSGESPRA
FSVGLSFPVKPVAAEEGKAKVVLDKKAIFREIERVGKGLVVKVEETKR