Protein Info for mRNA_3731 in Rhodosporidium toruloides IFO0880

Name: 12099
Annotation: K00820 glmS, GFPT glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 PF13522: GATase_6" amino acids 99 to 214 (116 residues), 58 bits, see alignment E=2.4e-19 PF13230: GATase_4" amino acids 99 to 177 (79 residues), 22.6 bits, see alignment E=9.3e-09 PF13537: GATase_7" amino acids 116 to 202 (87 residues), 45.9 bits, see alignment E=1e-15 TIGR01135: glutamine-fructose-6-phosphate transaminase (isomerizing)" amino acids 293 to 719 (427 residues), 436.7 bits, see alignment E=7e-135 PF01380: SIS" amino acids 401 to 528 (128 residues), 113.4 bits, see alignment E=1.5e-36 amino acids 571 to 701 (131 residues), 83.5 bits, see alignment E=2.6e-27

Best Hits

KEGG orthology group: K00820, glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC: 2.6.1.16] (inferred from 71% identity to scm:SCHCODRAFT_78455)

Predicted SEED Role

"Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)" in subsystem Sialic Acid Metabolism or UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis (EC 2.6.1.16)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.16

Use Curated BLAST to search for 2.6.1.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>mRNA_3731 K00820 glmS, GFPT glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (Rhodosporidium toruloides IFO0880)
MYELHSQLFRERTLTSAPLCRCGIFAYASFLCERDRRFVLETLLNGLQRMEYRGYDSAGL
EIEGDDPNEPYIFKEVGKVSMLKEKCMTAPIDMDKSYVSQTSIAHTRWATHGVPSTTNCH
PHMSDPMKEFTVVHNGIITNYKELRLVLEKRGFKFQTDTDTEVAAVLAKYLYDSQKGKQI
SFTALIKSVIMELEGAFAFVFKSIHYPDEVVVARRGSPVLIGVKTEKKLKVDFVDVEFAG
AADADKALEESAAPGAANGLLGVPGPANPQGGKLVRSQSRAFLSDDGMPQPIEFFIASDA
SAIVEHTKRVLYLEDDDIAHIAEGEFHIHRLRKNDGTVSTIRAIETLEIELAAIMKGSFD
HFMQKEIYEQPESVVNTMRGRVNFDTHTITLGGLKAYLHVIRRCRRLVFVACGTSYHSCL
ATRSIFEELTEIPVSVELASDFLDRKTPIFRDDVCIFVSQSGETADTILAMRYCLERGAL
NVGVVNVVGSTISRESHCGIHVNAGPEIGVASTKAYTSQYIALVMMAIQLSEDRLSMTAR
RNSIIDGLHELPGQIRAILQHDSEFQAIAPMLAKQTSLLIMGRGYQHATCLEAALKIKEL
SYLHSEGILAGELKHGPLALIDESMPVILVMTQDSIYPKVRSALEQVTARKGAPIIIAND
TDPSFDDGRHRVIRVPRTVDCLQGILNIIPLQLLSYHVAIARGCNVDMPRNLAKSVTVE