Protein Info for mRNA_3741 in Rhodosporidium toruloides IFO0880

Name: 12109
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 transmembrane" amino acids 435 to 454 (20 residues), see Phobius details amino acids 494 to 510 (17 residues), see Phobius details amino acids 516 to 534 (19 residues), see Phobius details amino acids 555 to 575 (21 residues), see Phobius details PF00172: Zn_clus" amino acids 148 to 176 (29 residues), 24.2 bits, see alignment (E = 3e-09) PF04082: Fungal_trans" amino acids 488 to 607 (120 residues), 45.7 bits, see alignment E=4.7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>mRNA_3741 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSDTNALFAQLFGDNGQAAFDASYLDLGGGGGAGGTGLGTSEGGTMDSLFSSAAFGALDS
SIPNMHDREASGSSGSTSSAEVASGTVAPADLSPAQSLSGSTAAKSTGKRAKKDTRKDSA
ASQGDGSEDGKDSGGKKTKRTRNRKPSSCAQCRKKKLRCNRSDPCDQCQTRGDVCSWEGA
EPLYKARDQADNEELRDQVARLESLVRYLTSQRQQDDLSSPNGVFEDPPSPGAASVDNFP
SKTSRQGSASASHAPNTPKFAMDLRANDLCEGLAQLAIKEFVVVEGSGTDSWAPGNKRGL
EFVDEAQQFVEHMPQQFGVAQSPAFVLGSSASSRSVAPSELGASPAPSMISSAPSPLSPG
ALGTASFGKEAPPLSEALKFLPTHEQALSAYKYFSGYVSWYAHPVHLQSFEEKWRDLEAA
LRIPDEEQRNKAIDPFFIATFLGVLATGLAMMPVKRAIRDGFGADKDKTVDYWLEGAMIA
LTCGRFLDNPSVEAVRATVVISTYFVFISTGERSGAGMGLLSLVVQIALSLGLHRDPDRS
PGKYTFFEAEERRRLFWNLFMLCILSSASLSRTWTVFDLNGVDTKLPLDCHDHEILDEAT
AMAGVEKRRAKFEETPMTSLIVKMRLAVLARKMNDRAFGIHPVPYEEILALDAELREFEE
SIPSRYQLRLDPSGALIRPTTHVTVTEMRACMIQISLAGEFLRLHRPWMLLAATDKRYQY
SRSQAIKYAKLLLAVYRSPSCSGNRWGGLSYKATNAAIVLGVEILAFPDGSEVSQIRSML
NAVYKQMERQASLSSLCRKGSRVIRFLLDKEAALSALRDQRRQIKRTRVDESGGDAFPSR
ALRTALDPNLVTQPLFMHDREEETLVHKTDSFGSPGDYFSAVPARNYPTAPLRQQSTGPR
PVPHPLPRPTRPAPSTSSIQQPPPSASSNFPDLAGTFEFDFRLPQPVPYASPAATPFSPY
AQPPMYSQPPIYTSQPPSQSTSPAYPLSSVPISSASPFPPSSTVDQKVPLYPPSSQTAYT
PRY