Protein Info for mRNA_3744 in Rhodosporidium toruloides IFO0880

Name: 12112
Annotation: KOG0955 PHD finger protein BR140/LIN-49

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1787 PF01426: BAH" amino acids 24 to 157 (134 residues), 52.6 bits, see alignment 1.5e-17 PF00628: PHD" amino acids 198 to 246 (49 residues), 34.4 bits, see alignment (E = 5.8e-12) amino acids 692 to 739 (48 residues), 35.1 bits, see alignment (E = 3.4e-12) PF13921: Myb_DNA-bind_6" amino acids 479 to 529 (51 residues), 24 bits, see alignment (E = 1.3e-08) PF13831: PHD_2" amino acids 705 to 738 (34 residues), 29.1 bits, see alignment (E = 2e-10) PF13832: zf-HC5HC2H_2" amino acids 771 to 857 (87 residues), 52.6 bits, see alignment 1.6e-17 PF13771: zf-HC5HC2H" amino acids 783 to 861 (79 residues), 37.2 bits, see alignment (E = 1e-12) PF00320: GATA" amino acids 1435 to 1468 (34 residues), 45.7 bits, see alignment (E = 1.3e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1787 amino acids)

>mRNA_3744 KOG0955 PHD finger protein BR140/LIN-49 (Rhodosporidium toruloides IFO0880)
MPRAATRAIKASGPLVFDGKPLVPNDHVYVSPPWDDREGEPYLIARVIEILQPVPKAASD
SPAPPTTSSSRSVPTTEPRVRVGYYFRTRDITNRYVADHRIIVATMHSDTVPASYIRGVC
MVKHRDHIEELEVYKREKDTFYWHQLYDRYLHRYFDALPTYKVQNAPAEIITFLQEHFEF
VLCEVGTGAELCDAQRGCCVCSRWAANAESVSCARCANVYHLNCVDPPLAAKPKAGYGWS
CAPCSRAHDEEVETWAETGLPPPVRKAAIEATARVKTVAPPGTSQMLHASKKGKAREVGP
GVRPDPHDWRMTNGWPYRYFGMHTNAYQILDPHDSLYPRASTRLGNRFQCIVPDWDPVRG
QQESTPGPAKQYFQPKRSRASTPLGRVEKDKAKKPKLIEIIPRGEEEAVQVIWRPTNKVS
DEALAELFERVKKTSMYQTCGVDVLNRAVSLIEQKEGNVNDTIAALRKVSIASLGHASWN
EEEKRKLVEGAQQHHNDIEEIAKMIKAKRMSDVVKRYYVHVGHTLQEDEPQQPEEKATVV
ATRSGRQSRRRVTRDVFEELEERDDDADDQASIAPPPKTPAQKRNRFCAICETTETEKWY
WCPENICDLEVKPHPMVMCENCGIRWRHYGAQYPPYGDELKPIPDKKKDSKKERERAAAE
EAKRLAEEAALAAASKEPTPPPPKPVIPPKPCLLCKRFEPKTALFQCDNCTISYHASCYG
VDLDYEIPHDEWLCNMCERDKERKPLVLHPHCVLCPPPQNVDPRSPMTALDCLKETELSN
YVHSLCAVWHRELQLGLPGLIYPVEGFGSLPETRVNAQCVICKERGVGCTVKCEDCLKHV
HVSCAWAAGYKFAFEVQPVRNKKRLPKDTVLLTFKGEEGVLLPCVWCPDHHFTHAERKTY
DLGARDQASKMTSLQMYVRNMKGTKHPDAPLLLRQGRRVDSFVRPVIRPKAPTPPPAPGP
RPKPKPLLTFVEELAAQAQAQREAELEEQRALEAKRQPKKRRRSSMTPAAVEQQQQPLEG
FVEQGGEQMGQEVDMMQVERAEDSPLPGKRVRKPTAPKLAMSPKAPKKSQAKKRKTTSFP
QPKALASMEHVINGSAQDYASLAHLPPLPSMDGFGAFTPEKMTLPALPVFPDSLPKLPSL
PSLPDITSPLHFSPATSAPHLLNSLVYTAHIPTPSFSSAPAHPSPLSYSSSLDPALQALT
AVAAAEADSREAGQPSSYAHPPQHVTNEANGEGEASTSANAEEVPEQAEAQHEQPVEEDP
PAQPEPQGDAEDGHAAGEEEAHADATEAEAEADGEDDGTPGRRPRRKVRAPAALRDTTAF
SDDPALQQLAQTSPRPRSPAALEPPPLHPILDYVRAHESAQHGFRIDTPDDSDVASDHLN
SPGPSSAFGSPALLPNPLPAEGGRSGGRSSDPNASPSSKARQRRKPRGSSGPSTCANCGT
SDSPLFRRDSEGRQLCNSCGLYFKTHGHDRPQKVIQRAIGAARVQKRKQQIESGETPPKR
IKPAGIPSPLQAAPHPHAPAQPSPLQPMPAFSYGDSPAYSPEAYAGPSGSGGGGGRRSAS
GSSSATGSGNGLNGTLSSGIAAGYESPYAAYVPPIPTTSQPFDPRQYAGGHHLPQPPQPH
QHHPYGHHFPSNPSPAGNASPQLPRPTFGAGPSSSSGHYYDPFGMPPSTSAGSTENTVDA
EVLQRHALESLAAQALSFGVGPSASAPPTSASQPEQAASAPAETSSAPAEMDPAHSTATE
QPHAQAPVHPAAAQVRAEDAKEQTGQPSPPPSASAMPLAPLFPGDSA