Protein Info for mRNA_3751 in Rhodosporidium toruloides IFO0880

Name: 12119
Annotation: K11348 BRPF1 bromodomain and PHD finger-containing protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1101 PF10513: EPL1" amino acids 9 to 116 (108 residues), 74.5 bits, see alignment E=4.5e-24 PF00628: PHD" amino acids 138 to 184 (47 residues), 36.8 bits, see alignment (E = 1e-12) PF13831: PHD_2" amino acids 150 to 183 (34 residues), 54.1 bits, see alignment (E = 3.3e-18) PF13832: zf-HC5HC2H_2" amino acids 191 to 301 (111 residues), 112.8 bits, see alignment E=3.4e-36 PF13771: zf-HC5HC2H" amino acids 212 to 301 (90 residues), 92.1 bits, see alignment E=7.4e-30 PF00439: Bromodomain" amino acids 482 to 563 (82 residues), 73.5 bits, see alignment 4.1e-24 PF00855: PWWP" amino acids 950 to 1062 (113 residues), 47.2 bits, see alignment E=8.6e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1101 amino acids)

>mRNA_3751 K11348 BRPF1 bromodomain and PHD finger-containing protein 1 (Rhodosporidium toruloides IFO0880)
MPGAHGSSLALPVVNFRVVDTSTPAPPDVHNPQLVAFGYNDGQEWDAYNVIADGEPGRYL
RWLQPMESDLAKQVEYDMDEQDQLWLDTLNAERKKDGLATIPYELFEIVMDKIEKEWFDL
TRNIPKRTNALPSEDSKCAICDDGECENSNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCR
KCTVSPDKPVTCVLCPNSYGAFKQTTTGQWAHLLCAIWVPETGVSNTVYMEPVDGLENIP
KSRWKLVCYLCKKRVGACIQCANRQCYTAFHPTCAREYGLELKMKQGSAAGGDLRAYCDK
HGETTASRDGSPFPILSKNRKSNLNPTASTSLLKITLKLPHKQTSKSARAYKTSFNSGPP
VVPAKIFDRIMQYIAKIKMAGKKEVVNVICRYWSLKREARRGAPLLKRIHLEPWTASATS
RQQSEQDKARKLELIRLLRNDLEKVRMLTEQVRKREKKKLERAQHIKRTIETFVFPKEKA
MKDALNELKKLDKQQYFAKPVDREQVPDYHEVIKCPMDWATMTGKLDRHEYPTALDFSGD
VRLVINNARRYNKSSSNVHKSAVKLLETIEPLLASLEALDNPLSTPNITTHYLAEILTAD
AVQQLFAFDYDTNDPDGKKKKAEEERVKREAEEKEKVEREARERAEKEEREKEEREKKPK
SKKAKGKERATDVDVEEEKAEVADDEIDAMDVDEDQPTETKAEKRKRLAKTRRESQAAAK
ERTAATEAATPAPAARTTRSGATPSASAATPGPSRTRSQVASAPSTARKEDAEVKVPPKS
KSKGKAEAVEPATPAPPPATLPSAAAPEAVDGLNVHDIDGRGSFRMFDSGWVLPEGTKRG
GARGGVVVQETPAPASTAPPPASASKQRQSAKTPVLKEGEAPQAGPSTKRARETGEAEPP
AKKAKVDPAPSPKKPAVSKYADGELREWERRFAELGAAPEVKVTDETVLEDGTLVWARQS
GYPWYPAEVADLKAADTPKWLKDSAPAGRSNKAVAVMFFDDKRSGAWIDRPHVRLLGESH
DFDQLFLFPSAIRATRKKDAPKGKSIASTLEEIKEAYEHATSLAETAEEAAKTEADLKAA
PTLSKGQRKRLRRKLTKAGKP