Protein Info for mRNA_3753 in Rhodosporidium toruloides IFO0880

Name: 12121
Annotation: K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 808 transmembrane" amino acids 90 to 106 (17 residues), see Phobius details amino acids 140 to 153 (14 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 202 to 219 (18 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 265 to 293 (29 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 640 to 661 (22 residues), see Phobius details amino acids 681 to 699 (19 residues), see Phobius details amino acids 713 to 738 (26 residues), see Phobius details amino acids 759 to 778 (20 residues), see Phobius details PF02366: PMT" amino acids 97 to 340 (244 residues), 273 bits, see alignment E=5.2e-85 PF13231: PMT_2" amino acids 177 to 324 (148 residues), 28.6 bits, see alignment E=3.2e-10 PF02815: MIR" amino acids 386 to 556 (171 residues), 57.4 bits, see alignment E=3.8e-19 PF16192: PMT_4TMC" amino acids 585 to 802 (218 residues), 206.5 bits, see alignment E=6.7e-65

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (808 amino acids)

>mRNA_3753 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase (Rhodosporidium toruloides IFO0880)
MQATASSQPDRLLLHRSRAAAPSPSPGSDSTTPARAVSPSHDPRLDKRSDDWNADVTGQA
GQAGTQGSGKGYLLDKGAEEEPPSSNRTDYIVLLGVFLLAAALRFYRIDHPSGVVFDEVH
FGKFASYYLRREFFFDVHPPLAKLLLAFQGWLIGYDGSFEFENIGDSYLDAKVPYVGLRT
LPALLGSAIPAVVYAIMRESGYPRVVGLFSACLVLFDNAHIAQTRLILLDAPMILFMALA
FYAYIRFYKLRYSEFTRPWWTWMTLTGIFLSLTISCKMVGLFAFLAVGSAVVYDLWNILD
VRRGLTIEHVARHFFARVFGLIVVPAIVYLFWFWVHFAVLTKSGTGDEFMSPAFQQTLLD
SPLTALAEEIRYYDTVIIQHKGTKAFLHSHPDRYPLKYDDGRISSAGQQVTAYRFNDTNN
HWIVEPTKEIPASGRGRVVRHHDIITLRHVLTNTTLLTHDVACPTMATNTEFTTWDGQCA
SEEECEAKTLDTHFQLDIDDAHEGQQWMTKSSHFQLVHIPTRVAMWTHTDPLLPDWAFKQ
QEVNGNKNLKDRTTFWAVDEIVRDPSKPDLLRPKKEPRKPTKMNFFRKFFELQVLMLQHN
AGLTDSHPYATGPINWPFLLSGISFWTGGTNERQQVYLIGNVVGWWICIMALSIFVGVLA
ADQLANRRGLTPIPTPMRNRLYNTGGFFLLAWLYHYAPFFTMSRQLFLHHYLPAHLISAL
VAGVVFHFLFCGDTVDYPVSVAGPLTRRRPRTRAKVGKGMKIAFVVVVGLLVANFAFLKP
LTYGTPSLTPEQVNRRRMLSSWTLHYAK