Protein Info for mRNA_3758 in Rhodosporidium toruloides IFO0880

Name: 12126
Annotation: HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 transmembrane" amino acids 303 to 322 (20 residues), see Phobius details PF00723: Glyco_hydro_15" amino acids 295 to 645 (351 residues), 170.9 bits, see alignment E=2.2e-54

Best Hits

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (690 amino acids)

>mRNA_3758 HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208 (Rhodosporidium toruloides IFO0880)
MVVKPNRSGGAAYPSGYTDAGDHALIGNMRTCALVSISGTIAQLCLPHFDSPSVFARILD
KNKGGHFSIRTTIPTQSKQQYVPSTNVVNTKFLSEEGVGQIDDYMPLPASKSDPTFLPWL
IRHVTTIRGTLTFTVECAPAFDYARASHDTKIDNKAQRADFTCPDHLNLDLRWVISEGEH
PKDGVEPPKVELDYLDLSERGHKGLGVTAQFTLHEGQSVTFVLREPPKEETSETSGEGSK
TANIPDFTKSHHGDTQAKSSYDPPLSQALIDRLYHDTVAYWLGWLQKCTYKGRWRENVQR
AALALKLLTFAPTGAIVAAATFSLPEDLHDAGRNWDYRYAWIRDASFTVYALLRLGFTEE
ADQYVDWLSGLMKTKNKDGSLQIMYTIHGTKEIPEITLDHLDGHKGQKPVRIGNGAADHI
QLDIYGELLDAVYLAQKMGRPLAYDDWLQVREIVDYVCEIWRNPDLSIWEVRGQMQHFLY
SKVMCWVALDRGLRLADKRSLPCPNRNKWLANRDELYEQIMDQGYNKEMGFFSQSYENKD
VLDAAVLIMPLVFFMTANDPRFQNTLNAILKPKDRGGLTENNLVYRYDTEKVDDGTGGGE
EGSFSMVTLWLVEALARAGQFEPAQLSKAVTILEDFLGYTNHVGLLSEEISKGGEALGNM
AQAFSFVSLISTCYNVDRATQSKNFPLVDA