Protein Info for mRNA_3766 in Rhodosporidium toruloides IFO0880

Name: 12134
Annotation: K20372 TBC1D20, GYP8 TBC1 domain family member 20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 transmembrane" amino acids 222 to 241 (20 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 606 to 627 (22 residues), see Phobius details amino acids 659 to 671 (13 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 72 to 280 (209 residues), 82.3 bits, see alignment E=2.1e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (691 amino acids)

>mRNA_3766 K20372 TBC1D20, GYP8 TBC1 domain family member 20 (Rhodosporidium toruloides IFO0880)
MQLLEEATEGPATPPAAPSDPPIASTSSLASPLADQSPTLSRREQVLEAVGRGDNDTLRL
FAADGAGFEDRELRRKAWPVLLGCSRKGKERADAADHAEELASLPVRDDERQVRLDIDRS
LVSYPHDVADDQRDALRQRLETTILTVLRRHPALQYFQGYHDIISILLLVLDDDQLLVET
AERLSLHQIRDSMGTGLEPTLGYLKLVHRIVERVDPDLHRVVNHAASMPFFALSWALTLL
SHDIESVAVIARFFDFLLAHNPAMICYLVVSILLTKKDDIVAVAAASEDDPAMIHSALSQ
LPNIVLEHTAPSPPPSPSPEPKRPALDGPDDYLSEDLMSSASFVGSASDLLRSPTLTATT
AETETEDEGQTSMLDASLISASEASPARTRESSGIPRSASSSYMFDADDESESLRYSMDE
SLFSDPDIDGPAFDPLPPSRSRTPSPPACALRTPSPHTSRSGHVITSASAGDDFDSPSHL
PPPRTVLASDLIARALELSQQHPLETINAPPVLGPNSCVSTWERSMSGELGDEEAEEIVR
KGEGIVDVALLGPDAPPDDELPDEGEPGADDDFELVEQDKSPRKGGKTRRRRSTLSSSAA
GLNLGPHGWLVVSGVAVATAAVAYGVYQQGGLPGFSPGSSGSGKSGAGAGGGLGTAGVGL
GLAGGLGGVGLLGGGGAANGAAVAGEGKRLV