Protein Info for mRNA_3792 in Rhodosporidium toruloides IFO0880

Name: 12160
Annotation: K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1287 PF00270: DEAD" amino acids 655 to 828 (174 residues), 165.4 bits, see alignment E=1.2e-52 PF00271: Helicase_C" amino acids 872 to 976 (105 residues), 95.1 bits, see alignment E=3.6e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1287 amino acids)

>mRNA_3792 K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5 (Rhodosporidium toruloides IFO0880)
MPRSPSPSAHHHSSKRRRYDTDDASPRSAHSGSGTGRSSRHHRDREDEYDEHRSSRRDRD
RDRDYERRRDRDGGSDGRRRDRDRERDYERDSRHRSSRTYDDSPRSDRGSSRRGGDDYAR
SPRDERRRSGRRYEDDDDRHYSRSSRSHRDERSPRREDGYRSRSPERIRTDRRAMSPVIP
TPSSASPLPAALNGDRTPIGASGSASPAGASSSAAAADEEKQRLKRERLEAWKKKKAAEA
AAAAASGSGGTSPAPTPAAASPKPEEPKKAEPKKAAPVSPAPASPAPAKAGPAGLPAKPV
AAMAAALPTKPISLSKPISATKPAAPAATPADATAAAAAAAAAISSRLSTLTSVRSNPLS
ASLPAKPTFSLAGSTALRSSGLKNSLSMAMGGDDEDDGRKKPGMIKIEGDIDMAAAGAGS
DDEDDEEDLEGGAAYRANAHGMREARMAALRNQEGADREEKMQLDSAEGPANVKEEDEAK
MDVDAQAGTNGAAEEDDEEDELEAYMKSVQKQVRNVDKEDQAKMAQGRKGQVLLEPNEPG
EDEDQDEGDENELDKVGTSAQDILALAAKKVKKGRELAVPDHSKIDYLPFRKAFYTAPPE
VASLSQEETDALRLELDDIKVRGAEPPKPATKWSYFGLPAACIDVIKGLEYAAPTSIQAQ
AIPSIMSGRDIIGVAKTGSGKTMAFILPMFRHIKDQPPLRPLDGPIAIIMTPTRELATQI
YKECKPFLKALGLRASCAYGGMPLKDNIADMKRGSEVIVCTPGRMIELLTTNSGRLINLQ
RVTYLVLDEADRMFDMGFEPQVMKIIGQIRPDRQTVLFSATFPRQMEALARKVLRRPLEI
TVGGRSVVADTITQIVEVRGEDTRFNRMLELLGKLFNDEEDARALIFVERQETADKLFVE
LKNKNYTCMPLHGGREQVDRDQTIVDFKNGSCPIVIATSVAARGLDVKQLKLVIQYDPPN
HMEDYVHRAGRTGRAGNTGTCVTFITPEQERYSLDILKALQASNAPVPPELEEMAKSFAE
KVKAGKAQAAGSGFGGKGLERLDTERDAASRAERAAYGETAKDEKKEEGEQTEAEKTAQN
VADLQVEVMRGPAPNLEKGKSMPTATSVVSTPVDKKAADEAAKKAEQEALAAGKSAGAVG
AASVIAKFNAMLKARKQSAQPDDNSTEAARRRDPDATDFHAIIWINDYPQKARWKVTNKD
TMVHLVESTGASITAKGTFYEAGKEPGPNDLPKLHLLIESNEEFRVQHAIQEVKKALVEG
ATMALEAEQRQLAGGGGGAAMGRYQVV