Protein Info for mRNA_3807 in Rhodosporidium toruloides IFO0880

Name: 12175
Annotation: HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 881 transmembrane" amino acids 450 to 468 (19 residues), see Phobius details amino acids 480 to 499 (20 residues), see Phobius details amino acids 778 to 797 (20 residues), see Phobius details PF07792: Afi1" amino acids 32 to 139 (108 residues), 73.8 bits, see alignment E=3.1e-24 PF09794: Avl9" amino acids 58 to 194 (137 residues), 24.8 bits, see alignment E=1.3e-09 PF08616: SPA" amino acids 442 to 552 (111 residues), 112.4 bits, see alignment E=1.8e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (881 amino acids)

>mRNA_3807 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 (Rhodosporidium toruloides IFO0880)
MQASPSAGLPASTSMSSIIAPGQTRPGAHVEYVLLAEFDIDQGSVLRHQYPCPTGTDEHL
LAEHMLPDGAHDRPEDWTVFYLGQIPPLTVDRALLAKTRADLKGKGKAVEGDEADIGEEE
EDNGLLYVMSLVRTKKDASVRRGALVKALAVVTRNPYIQIFKPALLFALEDYFNNPSLSV
LSNLYDSLNSMDTSGLPSLTRDERLVLRNSERKDLFEERFVAAAAAAADLTDDAGGVRSS
KRHTASGNGGSAPTDAVPGHDEEILSSSRPVSTEGSGQLRGIPSSDSLASASFGSAHSPS
LGTSAAASRDDLSLHGGRSSRANTINSMDDGRSGWSHTYASAVPPPPLPNRQSSGAGTTK
SAESSSRSQASPTISHRAGGAGARPKDTHFFETKVVYNGISIPVKIPVATFPSEIGDYSL
IKLVQTFSGPTSLAPGPILPQLHTSGPSTPALIVLLNAILTGHRVVFLGHQQPAGRVAEL
VLAACALASGSGAVLQGFVERAFPYTNLSNLDNLQNVSPGFIAGVCNPAFADRPSWWDVL
CNLETGKVVVSKELKPSATAATGSQINGSRNTIGRASDFASWASANGGAGARDGVDELGM
LSGPANQGAAGGRAVDGKESPDSVFMDEIMSAIQSHYGESVIRARFTDYVHRFVRLASRY
EEETTSTTSIGYPCSAFTSGAGGGYGAQSSLGSGVVFSDEAAGQRELASNSARIEGWMKT
QSYKLYQQHLRETSMPGLDLMHQIGRLRQSRLVSSAEAVLIFQTLAQCVRTDEQVVALLA
YLPSHFGGLLPLAFGFFHASPEVRHHTLDLFDQLSAHPTGAKLVSTLNAFHRLAYARLST
ERHSLLEQLRADEQPQPRDAKVARVRDTTVTLQSFAAEVSS