Protein Info for mRNA_3857 in Rhodosporidium toruloides IFO0880

Name: 12225
Annotation: Interpro Mysoin-binding motif of peroxisomes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1024 PF12632: Vezatin" amino acids 192 to 292 (101 residues), 40.6 bits, see alignment E=1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1024 amino acids)

>mRNA_3857 Interpro Mysoin-binding motif of peroxisomes (Rhodosporidium toruloides IFO0880)
MAEAVAYMDSPIADYLRQNGEGDDLLPSAPSTNPSLHPSTSTSTRTPSPSTPSRPPPPRR
TQTRHAASIERVKYALATSALLSAKLGDALQLYPPLEALEKQRAAAGRSKGKGKAQLQKR
DVGEVKAEWPSGWDSAGQGMLERGVLGNAQAALSGLAGALSLFSKPDQASVGNGAGLATV
EEEEPRTTPQEAVLASVERFIAASQELDLRVAAALTAIKELECIAHGLGLSDPLPPISRI
EARAHAPSSSPSSSPSPNPPPLRALALRTSLSQLLSSALSALSTSTADLNALLPRGSPLL
QLQLTAPTPALSPSSSPNHTSQASLSELLRHDTRARLERDEVERWEGASASGGSRPTSVA
QGEGSAFDPFHPTESTFGGIDRRVAIGDAGTPARRGLKSSLGPGSGASAGSPLRADPPAS
ARKKRPLSLGGVSAALSPSDAQQPPRTPSPSSPAQDLTPFLLITLQDTLETLHDTRRGVI
WRLLESLSHAQSDTAWNAIDGLVDSAARRVGEVASEVGQAHEREFGTSKPEEEGEGLERR
RSERRRRSGYYSRTAHEIEVDLPQSGTSTSPVATGLTPTTAKARGDALARLNGGPKPAGP
PATPTNSSRAPPRSTTPASYANFAPSASPSPADNSLASHTHALSLLLRSIQAKLRVVTSD
TALLATMRAEEVDERREKVLRTWDGIGREIDALRGEWSAGGEALKRALGLEVEAEQVEVE
EEEETEVARDVGDEQREEAGDEEQDAELNPTGAIYATLDSSGQPPSADETLATRQALLDA
TLSLSLLPPTTDAAAEEKVFEAVAGPPSSSRMYGPDGSKLSRDERIRRMREAREALQRGR
ESLESSPTKERGSIGGTAGGVEEQQKMVGELREVLRELNREKGRETPEPPRPAPAPMTPS
RATTALPPPIKASPAPMPPKIPPFPTGPRFAPSPPVSPQRSAFAPPPPPPAVRSPPPFAP
SPTTARSPPPATNRPPPPPPSYAPSGSPPLPPPPASTRSPPPPPQQQPYQPQQRVKRPSV
VQTV