Protein Info for mRNA_3868 in Rhodosporidium toruloides IFO0880

Name: 12236
Annotation: KOG0603 Ribosomal protein S6 kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 842 PF00069: Pkinase" amino acids 431 to 691 (261 residues), 221.1 bits, see alignment E=1.8e-69 PF07714: Pkinase_Tyr" amino acids 432 to 675 (244 residues), 115.6 bits, see alignment E=2.5e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (842 amino acids)

>mRNA_3868 KOG0603 Ribosomal protein S6 kinase (Rhodosporidium toruloides IFO0880)
MGRADRTTNALLLSALPEHLHAHANGSSEHLDALLRPLPHSRHSGRSSFRWSTPGSANTS
DGGGGGSPTMPLSPAESFCQLYPPAPHLTPLHSPAPTPPRSLSPARSLSSLHSLHSPTKP
SAMSLTSATDPREEERTAEPASREDEAIEVGEEMDDVPTTQLVGRLKVRVVEAKGLAIPE
GEVAKPYVLLQYDRTDSVSREWGAPPPLAAPAGDGKRGAIRRKRPGSNSHVHGIETTVRR
VVGGATTAPSVASTSTKSDDVSPVPSAFTSSRSTGTSSTSSAISSLASVTVPPSPNPRQT
TSSLPSTTHTLRPVSPSLPSGVPSQIGTPSNPIWDHTATFDVVSPGRTILVCVYDKLAPQ
GGDSRRIHGFLGASVFEPPLLEEVDKGEDGDGLDVWVPLTSALDPTIGGEIRLRLLFEPL
LSRPKLTVDDFQILRRIGQGSFGQVFRVRKRDTKRIYAMKVIRKASITSAEALAQVLAER
QVLARTIDSPFLVGLKFSFQSERELFLIQDYKSGGEMFQHLQRDGGRFEEAKVRFYVAEI
ILALEYLHENNIVYRDLKPENCLLDGSGHVVLCDFGLSKLLDSPDEKCRTLCGTTAFVAP
EVLLDVGYSFPADWWSLGVLLFEMCFGWSPFYCESRIEEYERILGMEIKIPSRKGYGPEL
KDLLLKLLERDPEKRLGSTGDASSIKAHPFFSPIDWDKLALRQVSPPFKPPTHADDDQPD
FYDNGHEWSWCFGDEGGCWQTPPSTSSGPGTGARNSRADCVNGWWSKSAAESARSSAAQL
IRNFTWMGKEGREKKGGAGGRGRKAREEKEQEEEEKRGGTDTRRSSCEEPRRGSDTRRSS
CA