Protein Info for mRNA_3878 in Rhodosporidium toruloides IFO0880

Name: 12246
Annotation: K07975 K07975 Rho family, other

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 PF00025: Arf" amino acids 37 to 206 (170 residues), 23.9 bits, see alignment E=3.9e-09 TIGR00231: small GTP-binding protein domain" amino acids 38 to 175 (138 residues), 102.8 bits, see alignment E=8.1e-34 PF00071: Ras" amino acids 39 to 206 (168 residues), 176.5 bits, see alignment E=4.8e-56 PF08477: Roc" amino acids 39 to 152 (114 residues), 75.7 bits, see alignment E=5.7e-25

Best Hits

KEGG orthology group: K07975, Rho family, other (inferred from 67% identity to lbc:LACBIDRAFT_302760)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (225 amino acids)

>mRNA_3878 K07975 K07975 Rho family, other (Rhodosporidium toruloides IFO0880)
MPALCGLPLPGSNGGHDHAGNGYGLSGTSTKEGRPVSRKVVVVGDGACGKTSLLNVYVKG
EFPELYEPTVFENHCVDIVVDGTPIELALWDTAGQEDFDRLRSLSYADSNVVLLCFSVDQ
PTSLENVKSKWVDEIRHYCPGVKLALVALKCDLRSDPVVRDKLASAGMQPVEYEEGLAVA
KRIRASRYLECSAKHNRGVQETFEEVSLPPFAHCLSPPPGLVLPG