Protein Info for mRNA_3914 in Rhodosporidium toruloides IFO0880

Name: 12282
Annotation: HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 transmembrane" amino acids 134 to 154 (21 residues), see Phobius details PF08101: DUF1708" amino acids 112 to 485 (374 residues), 87.4 bits, see alignment E=1.2e-28 PF00620: RhoGAP" amino acids 116 to 267 (152 residues), 37.5 bits, see alignment E=2.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1026 amino acids)

>mRNA_3914 HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350 (Rhodosporidium toruloides IFO0880)
MSMFKKKKSLLRLRPGSSESSNPSSTLPTRRVASGPTLPSPPPQDTSFPVRIDDFGRPIT
TDRPAFAAQTTGSSGFGNGYGVGEDNEVQPAEMQLLYGYAPIATTVELGIIKVERIVQAC
AEQIRKRGLDTPLILSSMALDLSLDGVCSLIRSYLEDHETWLQDLELANPLSIGAFMKWS
LARLVNDRGGRGFVSWELYNEFKKAERATGYQPRSCTLHLVSRLSASNGRLLSSLLSLFS
SISAHSAKNGMSPRKLAALFSPYVFGLRDDGSFDETYEEWQRGTTALEHILLSFIRNQQA
EGALPTFLERFITGYPDTLGLSYDNSRPQLPKGAPVEEVMRVKRVTRFHSRNLIQQAATW
EVPYSNDWKLFLAPASSTSPDQPVYAPSYRHLLNIRDGLVDDEDDALEMQRFRSLVDKEW
AQFGQKGFQDVDAKKLEFDLTEGEREAVKRKRDTLDWSTFETTGFSGRDIFAPTDLVFHQ
SIGQRVNTWPSSAQKLNERLRETEKHLPPFPYDTTPREEGRLVVEKVFFEAYADVLVGGG
WARDELKESSFALIQWKAQPRAGEVAKGKVVGNDPRTEERWVLVEEFVPREYREALLADP
KAKKQAKRVSFLRAVRRRSGGNSASPRASQPSAGHGNLGGLLSPPLSSSYTRKESTLRPI
DENVFNPDNNAETKLMSLSNVHLNPRDTYASYGATTSYAPSSAYAPSVVSTVRAADGHTA
GHSALDLHEEPTNSFRPPSPPPQAEAYPSRPQVAPVIPSNGAFLAPPVGFTKPPSDKRGF
LARIGSRKMSGGSGMSGILGGSGKMGKFFGVGNGGADAVGVTLPAAIPSYGNGTLPGAPP
LGPPVETLANSYDSPPVPPKVFAGARPHSPDFEPVEAPAGVAEEDPYDGIDSSADTRPSE
DGRVLFRGSRSYPEGLDAEAEGRTSDAMEPHDGAQYATEAAGLHQQRPPRHESLPDSPKP
DAEVPIDAHPSDRYASGVSQFSSRVANIVGLYEQRGGQPNGPGDIRLTQYGFDEASSPTT
AAHYNP