Protein Info for mRNA_3915 in Rhodosporidium toruloides IFO0880

Name: 12283
Annotation: K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 PF03403: PAF-AH_p_II" amino acids 138 to 323 (186 residues), 133.1 bits, see alignment E=9.7e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>mRNA_3915 K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase (Rhodosporidium toruloides IFO0880)
MGLIVNSLPKYSGPYLVATADLELAVATPRSFGHALLKSTKRPALQLDTVLVTLFYPADS
TQRGSGKRQHWLQRPLGQTAEGYARFLGQKPWLVKALFWLVGAGMRLPVQADRPLASRKA
EDEVTNEGRSTASSHDTVVDGALAGEKDRFPLVVFSHGLSGTRTTYSQWCGEIASKGYIV
AAIEHRDGSGPVSVVRSGDGKERIVDYIRPEHLEWPSGHSPQSAMQFRSSQLSMRLAEIS
SVLTLMQRLNDGDGAAVAKENRRKEYGEGKSLEGWKGRIDMEKEVTMAGHSFGGATTIQV
LRAGATQYPFKRGIALDPWADPIPPAPSPSSPSFSPLSASVSTNTTGSNPAPTTSPSNGN
GGKVPLDINVPLLVINSEAFTLWRQHYSLVRDIVKAVGGGAERWLMTLVGSIHISFSDLP
LLLPSYLNPRAGSRVPARLATSRVVEACGEFLSGQGTSGEILGQRVKEGDEDGARDGEGG
KDAEGKKRVMQGEVGSMRMHIAGRA