Protein Info for mRNA_3917 in Rhodosporidium toruloides IFO0880

Name: 12285
Annotation: KOG4479 Transcription factor e(y)2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 PF10163: EnY2" amino acids 16 to 95 (80 residues), 80.5 bits, see alignment E=4.9e-27

Best Hits

Swiss-Prot: 40% identical to SUS1_CRYNB: Transcription and mRNA export factor SUS1 (SUS1) from Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)

KEGG orthology group: K11368, enhancer of yellow 2 transcription factor (inferred from 40% identity to cne:CND05070)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (100 amino acids)

>mRNA_3917 KOG4479 Transcription factor e(y)2 (Rhodosporidium toruloides IFO0880)
MPAAAQPPQTQQDLHAALRTRMIQSGEYSRIMDALRAKLDESGWEDQVRDAAREKARSQD
PPNLHSLVKDLEPTALNMIPQEARAEVEAMVRAFVEKSVE