Protein Info for mRNA_3919 in Rhodosporidium toruloides IFO0880

Name: 12287
Annotation: KOG4020 Protein DRE2, required for cell viability

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 PF16803: DRE2_N" amino acids 60 to 156 (97 residues), 39.1 bits, see alignment E=9e-14 PF05093: CIAPIN1" amino acids 232 to 319 (88 residues), 77 bits, see alignment E=1.5e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>mRNA_3919 KOG4020 Protein DRE2, required for cell viability (Rhodosporidium toruloides IFO0880)
MASINLFDDDIDLNGVPAAVPQDTPAATGIAAVPADILVVASQQAAQDGSYQALVTELAG
KGKVEMQMVDRVVEGATSLPTSQYKQIAVLLPATMVTGSLLALLEPALAAGGSFEVRGEA
SESEEVLGELTLVGLSGANKTDGAILATKPAVTSVPLSLKRPASAIDTSAASAPLPVDGA
SGAVPLPTRKSRAAKASLWAFTTAAASSGAATPTIDESTLLTEADLERPTLVKREDCDVK
RTRRACKNCTCGLREILLDEKEPDDLVQAGFAAQPNATANNASTAGGAKVRTIQSGVTSS
CGNCYLGDAFRCASCPYLGGFACFLCVSRCCTDWRLSLAGMPAFEPGQKVVIGGLDDA