Protein Info for mRNA_3931 in Rhodosporidium toruloides IFO0880

Name: 12299
Annotation: BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1321 transmembrane" amino acids 370 to 387 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1321 amino acids)

>mRNA_3931 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] (Rhodosporidium toruloides IFO0880)
MSLSLHSGQAADARNRRSSSSRPPALDLRDSSPRLEVSTHGADGRSPRSLAFHSPGLVSP
AHISTLPPTPPSSFPPSPPLIPSSADGKPVNTLRLSSGASYPTPPASAPGSARSRSKGFD
TALEINSSPSTSMERQNSRSSSILLGEDLRDDKDPSAKRRPSLILTSAPTEEPQGLAIGI
DMGDGGAPAPLMQRSFSGSTSPLHSPMQPHFSTSPLNSPALGALPSPLLAAGPAFPGSSS
MERAPSSPRLASLTGFASGLVRRTSSSSLNAELPTSIKSAPTSPTIPSIPSPSLSPSLGV
PKGPVRRTSFASAAREEERKKEKEAKDREEKKRIEKFKHNRGFSWAVRPDDPHLKKARAD
SAKSGWRRRLLILFVVSLVGFTIAYYRSNSSSNVPMRQTFSQRAKSSAQSGRATWQGAGT
RARVKNGHFIHPDVVERKQAPSSSWIGAPYRWVRRFFVVDGPSRTPQYRQPPMPRKSEVA
VPEPTDKEVKEKKRHNVFVARPHVEFVDHEALAPPVEHGDAPERDTLVLYRILGNDLPPR
HSPGQTLRNLRFLLQHESDFSVLPPLGPHGVHHADLYGSGTKAQQAHTQMGGLRVDKYFV
LNRIAEPELVSAIIGLLHMYSVPDSRIIVIPFDWDEYQRREFRWDGGVEHARGWGIGDGS
AVAKKKPTWTQVPDNVQIPGDLSVLLEEADGDEARATVDALQAKKRKAETLGRLRALDFT
FHEKNLYAMNNNGGRNFALHHGRSLPNARWILPLDGNSFFTPAAMFSVVRTLSIAGEGPA
ASRYVVIPMARLTDNEDVQKNNTIDLVPLDIEEGASAIVDAEILHRPANAPDTPEEPQIG
FRYDSTESFQEAMRYGRRSKLELLWRLGAIPYSRGLDRRTLPWEVTDRAHITAKTWGSIP
GVEGSVTKDSLIHAPHGEHDPWGEPNPPRGHLAYVKAGWVYRLFSGFKSQEEHSTEAATL
RNTNRIRGIVAFLERLDELVARGEHGCFGEENPFHCGFHPDRLWNFDMFDVERLRQKFKL
NRRDAVVKIERFERLVVPTLRDVRHVLKDPAAFRDLHAQKAATGASLLAMAGYLTGNSSY
SNAAAELIAERFIRRTPLFYHRVGEQEQLNRKAQEEEALLDDREVNGFAFPPFPKDPGQP
GTWSASLGLKLSEPDAPSLPFDPMTFDPLLLLDAVRLLNHPSGPKLEKGSIASRKAITPM
VNSHLSYLLFAPEALSFAQSPPSPDDGAFYDAKVAALAAFLDDVRLVNRVANRARLRLPS
EMRAEGLMHPGGAVREIHFRLIQGLYNTKVRPYNMASDEISQAMYVTRAHGTETPLDVLG
L