Protein Info for mRNA_3945 in Rhodosporidium toruloides IFO0880

Name: 12313
Annotation: HMMPfam-Protein of unknown function (DUF2422)-PF10337

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1046 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 630 to 648 (19 residues), see Phobius details amino acids 654 to 674 (21 residues), see Phobius details amino acids 681 to 703 (23 residues), see Phobius details amino acids 714 to 733 (20 residues), see Phobius details amino acids 738 to 758 (21 residues), see Phobius details amino acids 779 to 800 (22 residues), see Phobius details amino acids 946 to 959 (14 residues), see Phobius details amino acids 1003 to 1017 (15 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1046 amino acids)

>mRNA_3945 HMMPfam-Protein of unknown function (DUF2422)-PF10337 (Rhodosporidium toruloides IFO0880)
MGLLPRISTRQGIAAFKGAIAYTLAFILIFLHPFSRLNPYPVTLSGAILITIAGQPGLSV
GACWDQAFFAALGVGLGGAAFAILAKLGHSQVAQGFVFAVFVYLAALVKAQSIRYFGASL
LFIILAFSGIYASILSRGNFVPAYLEAYLESYCWGFAIVLVVNLVVLPHSSEKELREILV
ISLEHISTFSHLLAKTYSLDITDDERAVRDDLSQSIRADMGVLNQKLAHTSLEINYSKWS
MTDYHLMVGKLRQMQLGLIAAYSSLVSMERFHPRALELVKEELTSSGADKWFSKLRRGAD
LSFSDIVAELAVGKVTYHSPAPGERSWDEFRDIDHDAGDVEAGRSESGRQRAFSVARRDE
MQERMAAMRERLRSEVAGSTPAMSRRPSMSGLADSVVDPGFAAQAAAALTAAGEGQKRKM
DKAATLRKCWASFKASQLSSIQKILEDGAPEDDELHLHRPGPSVFDQYTDTPSRHRARQA
ASSTAVGSDTPALSKRTTTKGTDAASGASSDDEKDASPATPAAVTSDQICGSAVMRTFAF
LAGMGSVIDELASLYDHIVPKPDSPPRRKKLRAHIFERRRSKAAQAGKTPRMSLREALAR
LSGRDFVPVKKNIWTRVAELERLLRSPDSIYAFKTAAAVAVFAVFLLAPSLHTFFINYGL
TGGIITIVVAVSPTLGQSLVTFFLQILGTGMGSLIGLLMLRIFLDVGGYKFNPYGLAALS
FVFGLPLSAIIYVKPMFFAGALLAMNSAGTLIVTEWTYNEVPGQIRPGFDSPAYRASKQL
VAMCIALAIAAICAFQIFILRQPARQNLRQKLAHVSWSHNAHSALFSYLTEAVMPMQEDS
TDSPPPDWDAVEVVRNELVQREIDTQGQLLALMPLMKFASVEPTFGAPFRAPEISRLIRS
HQLVLDRLREARSAIGADGFSPEIRRNFSDVLVPYRRQGKRISRALFYFVATSLSTKAPL
PPDLPRMTLTSSNIQHDALVLSRRLTKTEVGQQILRSEVFLRYWHFMASYSSIAYILEGM
EADLVSLFGSQEESPFVADALPRTTF