Protein Info for mRNA_3957 in Rhodosporidium toruloides IFO0880

Name: 12325
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 61 to 79 (19 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 276 to 302 (27 residues), see Phobius details amino acids 314 to 331 (18 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details amino acids 448 to 468 (21 residues), see Phobius details amino acids 480 to 503 (24 residues), see Phobius details amino acids 555 to 576 (22 residues), see Phobius details

Best Hits

KEGG orthology group: K08197, MFS transporter, SIT family, siderophore-iron:H+ symporter (inferred from 40% identity to act:ACLA_007770)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (601 amino acids)

>mRNA_3957 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSSTPSTRAPSHEITDEEKADYASASPSLKQGDTADATLVPAKSRGVRQMEALSNRMSVK
YRVLLYGGFALLAYVMSLDQYTNRSYLSAATSVSFAAHSTLTTISALKSVFQAVSQPPIA
KIADVAGRIECYALCVFLYALGYIVVASAQNIYAYAAGTSINVLGITGLFLLQNIIIADI
SSLRNRLFWSIFPSIPGTINVWVSGNITQSLLGKANQNASMWRWGIGMFCILTPALAVPV
MLTLGIGMRKSKKAVEPAPVSNEGPRRSFWQKTVSVFWSLDIIGLLLLVGGFGMLLTIIT
IANGKGSHWKDPHSIALLTVGGILVVGFVLWERFGARHPLIPFTLLTNRTVIVCFFLAVI
HPAAGGVIGSYFYTYLLVAGDQTTLSATRITSIASFTGTLTAAVMGIVVRYIRVLKPVII
LGFCIEVLAFGLMIRYRDAGASKGDLAVVQLVRGFGVGCIGFPVQAAIQSVSKHEHLGAI
TAGYLTVYYLAGGVGSAIGGGIWSNSVPGKMQSYISNSTLAAQAYANPIGLIAKFPPGTP
VREAMSRAHGETQRILSITGTALAAVGLLVAFGLEWVKLTDNVTLDKVEKAEDGKVSEAV
K