Protein Info for mRNA_3968 in Rhodosporidium toruloides IFO0880

Name: 12336
Annotation: HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 386 to 408 (23 residues), see Phobius details PF00314: Thaumatin" amino acids 29 to 257 (229 residues), 172.8 bits, see alignment E=4.1e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>mRNA_3968 HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870 (Rhodosporidium toruloides IFO0880)
MRSLLTSVGLAAGLLAGTSLAARTIEIQNACSYTVFPAISSLGGGTEAYNGEHGWESPSG
STKSIAVPNAWAGRVWGRHGCVKSSDGATVNCVTGGCTGNKIQCGDGELGGAATSAEFRL
QSQANGQVDMYDLQNGGGWGVPIGIKPQQSGCDAVSCTPTLSTCPDARLMLKDSYGQVLG
CNSACYAGIGDSNIQCCKGDYASPQTCTPDKIQFYSYFKAGCKNAYAYFQDSNANGDETG
FVCKSSGNSGFTVIFCPEGDGDSAGGKSGGKTTKASSSGGAATRSGDTTRSGNPGQATVT
NDLSASLPASSAISTGAASANSTASASASSSTSGSASDSGAAAVPTATDATVAESVPTGT
ATADEANASTTAGTTTSSPTSLSKPVIFAIGGGIVLIAIVGVILVCFISRRKNRQDAAAA
AQGAPAPAQGRSKKPPPGSDEEATAADTNRNPAQGYNALGHPSRRRSRHALLSSASESES
DSSLFSPSEDEKRSARRQASLRSARSGRSERGGR