Protein Info for mRNA_3972 in Rhodosporidium toruloides IFO0880

Name: 12340
Annotation: K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 659 transmembrane" amino acids 425 to 442 (18 residues), see Phobius details PF00270: DEAD" amino acids 198 to 385 (188 residues), 160.5 bits, see alignment E=3.8e-51 PF00271: Helicase_C" amino acids 421 to 530 (110 residues), 103.5 bits, see alignment E=8.3e-34

Best Hits

Swiss-Prot: 68% identical to DED1_USTMA: ATP-dependent RNA helicase DED1 (DED1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K11594, ATP-dependent RNA helicase [EC: 3.6.4.13] (inferred from 68% identity to uma:UM04080.1)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (659 amino acids)

>mRNA_3972 K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X (Rhodosporidium toruloides IFO0880)
MTQNGHTGLEGPMSSLNVNGGSAPAPRAAYVPPHLRKARVEGAAPPVPAVGAPAQLAPPA
AGGGGGWGGNPAVPAFVPRTDSWSTGQRTGGGGGGFGGGAPRSGGGFGGSAFAGRDGFGS
WQGGKHVPGQSNPRLEKDLFGEVGDGTKQTTGINFDAYADIPVEATGTDVPEPITEFLPP
IDAHLLENIALAHYKTPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPILSALFTYG
PRPNPMADNQPRFGRGRKAFPTALVLAPTRELVSQIHDEARKFAYRSWVRPAVVYGGADI
GSQLRQLDQGCDLLSATPGRLVDLMERGRISLANVRYLVLDEADRMLDMGFEPQIRRIVQ
QADMPDVMDRQTLMFSATFPREIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYVEDED
KRSVLLDILYAIPAGGLTLIFVETKRMADLLEGFLAQNNFAATSIHGDRSQREREYALET
FRSARTPIMVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGQATAFIN
GGNRNIVRDLIELLREAKQEVPQWLDAMGRQSTGFGGGRGRGGGRGRSGPTRDFRSGGGG
GGGNRFAGGNSFGGAASGGWGAPAQSSYGPPRMGGAGGGFYQAPSYGGAGAGGGSSAWY