Protein Info for mRNA_3976 in Rhodosporidium toruloides IFO0880

Name: 12344
Annotation: K20473 NBAS neuroblastoma-amplified sequence

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1243 transmembrane" amino acids 422 to 443 (22 residues), see Phobius details amino acids 671 to 687 (17 residues), see Phobius details PF08314: Sec39" amino acids 188 to 942 (755 residues), 238.8 bits, see alignment E=7.2e-75

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1243 amino acids)

>mRNA_3976 K20473 NBAS neuroblastoma-amplified sequence (Rhodosporidium toruloides IFO0880)
MFPQDQCEWICAAAVQVAREGKTDDVVVALRALECGLRATERWSASLAGLADSIAEQEWD
KAAETIKSEPQGDEAKCARARTALLELQDRATSWEALFGADAETRDPSTPKLGGAAHRRT
LSSAADLRARGGEAQANGEAERSHEDEADGWGELDLPNDEDDAARPPSTPQPAPLLPLSQ
FLSTPLPLVALTLATTSHLPELHLLLSLHARSLWPYRSQILECIPGWIDPAEFADLLPAI
DATGAQETMWEDVLPWREELDWSERVLDLVQPSSPATDLPEYRSAAEVAGWYLSRVSSLV
EGGYVDSALALVQHAAARGVEVPAGGTGGGLDEVGEELTLLAKAVYERPFCGVSAEEDED
WSLERWRSLSPKQVIETYTSTSTPSTIAQTLRSLVLPYLSVVESRLERRGEANPAETTTR
LLYVHVLALPLSSSGLHLLFPIFEASKPTLPVSQRIVKSDTDLARLAIAVLYGAGKQGTT
QEGAAVMSKIFECLPAFDGSTSTAVDGKDAGLFELASASTADLARPAGPTSTAPPPPSPS
PSVFFTALSLAPPTALSAHLDTLDLHLSQLESLLRYHSAPNTGLFWFLSSYRSETAQRNW
ATRLARTAASNGAGTDGDEGEFESADMWLELMEFMAEGTGVAGEEASGTDEERIEKGLGR
LFWKLGKEEALKIFFGGLLGAGRFTLARSLFEPSSTTPPLQPQAVEDLVISASREFYDNA
EEGNLHSGDMKMAFDCLSAAPQQTPRIRSERAFIEATSRLCSFRLDSRPGIPLTPIELRH
APDRLLYVSRLLSSNDSAYRHPEMVLELMRKLGYPEGGKEESRTLAMLSDAAVQAGDWTR
ASEMCDRAIKVVEALRKKASRPAKEGQEERQRDADEAAEYAWKACFQLGKHEGWRDSQKR
LQALGQALTLCPPERIQDILPTWTALEREVAQEALKKERDEANGVKPGAAGGNAAEAAAR
AAAETAAAGAAKVANFLSAAAARAGTSPVPPESPRSGTFVKSPSSGTPQSAHFPTSAAAA
GHLAHETAAAASYTLRRAAAFFGGDHSSNRPQSTSPARAARPVTPISPASSSASVTSPPP
KTRAPRQAPARSPSPPSRFASAFDNLADDRPRPSPSSPPRAEGGFGGFGLRSGLSKGLTA
GVGWLIGADEMLEEEKRYEEEQRRRQEAELRERQKEQVREARGEPAPVKQAPQPAKVQET
ARQVPLAASSKPKGRTKLQAVRVPVEKKAQPPKAKDEDDWDAW