Protein Info for mRNA_3982 in Rhodosporidium toruloides IFO0880
Name: 12350
Annotation: K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (3211 amino acids)
>mRNA_3982 K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C (Rhodosporidium toruloides IFO0880) MVLEGVLAGILNRTLSAYVDNLNTSQLNVGIWSGDVKLRNLRLKKEALDKFRLPVDVVEG YLGDLTLSIPWSNLSGKPVRVLIENVYLLAVPTDSSKATPEEDAARAQAAKLEKLENAEM LTTHPAPGLSAEEEQKNQSFTTSLINKIVDNLQIEIRNIHIRYEDKLSVPGHPFSVGLTL SRFSAVSTDENWQPTFITKHAGPVHKLATLDSLAVYFDTDSPSLAGHELSEAIVQFTDLI AREGHTPSHQFVLKPVSGQGRLVMNKKVDAHTPKTDAELLFQELGFVLDADQYRDALSMV DLFHFYIRQREYRSFRPPQEEFEKNRNRALWKFATSAIRSEVHEKHRQWSWEYFAERRND RKAYVELFKKKTLGTIDVEESQELVDLEVKLGYKDIRFYRSIARSEMRKDRIEHPPPPKP QTTTAKATSWLGSWVGWGGGGSAAAADQHESDDPSSGLNEEQRKELYKAIDWDEKDAVAN AVDYPADTLLLRVKAKLETGSFALRTDPHGAAKNLIALNFDDLRLDMAQRPENLEATLAL GGLRVFDGTCENTLHEQVVRVKEIAADEEEQRRAKKKQRARLPPPEEREADDDVGQYEDG DEEVEDEIARDGVGEWAMQENPFFSLKFEHNPLDKRADNALAVRLRHTEIVYHRGYVEAI FAFFQPPESQLESVGALIDVASETLEGIRKETRAGLEYALQQHKTVDVQLDLNAPIIIIP ESMTQKDCQHIVLDAGHISVVSELADQSAIDAVKAKEHQEYQEEDYKRLESLMYDKFYVK LEDAQLLMGPSLQTCLDALDVKGDHHSSSTGELHILERTSLTFLAQNCILAQAPNLTRFK VSGSLPTLQLNFSDRKYKSLMRMIDVAIPHFGDEDVQVQRPGPQPNQRGTSFAQSRSRAA TLDDDDEDLHVGHETDSEGAEGDIGDDEDDKDGGKDEFFDTPDIADGKQNIHQKTFEFSF SVDRVQGSIYRSNADPTKPDRLLVNAVLEGFKVGFELRPYDMSVDVVLRSLYLEDKMTAA QNSDFRHLLTSEKLEGGHEHDLVRVRYHGVQKNSPEFMTVHEGFDKSVDVEMSTLNLVVT RSSILLLFDWIMTTFTDPVDISAPSSPQIEGAESETQVAEVNMDKLRVKVKLTSINLILN EDGLRLATLSLSAADVSVLLRGPTIRVATHLGNLSLHDDFSSSTPQEMLTIQGDEFADFR YETYDPNDKTTYPGYDTSVHLRSGSLRFTFRSEPVHRILAFFTKFGRMKAVYDAATQAAA QRATEMQTMIPKMHYDILVKTPILVFPHEEAERADDTIVAKLGELSLKNDFEVTDEIVKT KINFGLHEVGLESTLYHGGEAHSLPVLDGVRIDVSVTLHESVDPAKDLDAPGTLVSAKMS DVKMKLTQAQYGLLIHLSQTIPSAFAFDEEELDDEASAMIEAAPVPSPPKKDVEAAVKGK NGDVVRDEHGAEVVDLLPELPKSAKTVDGEQVQLKSTLEVDFAVNTVFLELFTEAATSTE SLEEASLARFALNDTAVKYKMVSNGSMEAEVAIRSFTIHDTRPARLTKFREIIPATKHSG HQFMVHYTQSGGLDKSAIANVTVDSPKIIFSLDPLFALVDYFSSAFPQAPNAGQDEDDID EGLKEADEQKVDPSPATESTLAYRINVVSPTIILLENPAKADSEAVVLSLSQAQMTQQGT LALTIARMGMFLCRMDRPKENIRVLDDVDVILSMDSRTDGGRQVTNIEVGVQPLILRVSL RDIFLINSIINRAIELSNRGSPAPEEQPARPDLESLQSGKVRTRSKSNAATRRRSVSGAS RPVREDLVKAQVIVTKETLRATFDGLQLIIIGDMHDLPLLDLKAGKFTAKAKDWSTDLDA SVMIKPFINYFNLKVSHWEPLMDPWEFGVHVTRSVTTGLLAIDVSSKKRLELNVTSTFIE VAMTTMSIMDREGDKVFKKPRGSNAPFLIKNRTGYPLSLWSESADAGARGQRLDDGDDVP WRFDDWRTARENVSASTHNSLTVVFDGMGWERLKHVYVDREGEHIHALRPKIDKVTHRLL CDVKLVDNVKVVTFRSTFLIENKSLVNAEMVIVDEHGKKASQVYKIPPGGECAVPILAAY HNRIKLRPDPGFGYNWSTDSLHWQDLVKRPTRAIVCKSQKEAAFRFQAYALHDKSDPLVR IYPKITLRLRAPVEVQNLLPHDVRYRVFDKNLEHNWTSFLRAGGVSPIHVAELSHLLLLS VEVQDTNLGRSEFAIINTDNPEDLPVEGDLVLADKEDRKLNLRIHYQKHPDSGGAFRVQV YSPYVLINKTGLPFALKTKSFFGSAKSVAGLDEFSSEAAKRKAEDAFMFSFPTDDRRNRA LLRVGDSNWSAPLSFETIGLTTEVVLPSTTGKEEVRVGLKVTEGLGDYKLTRVITLCPRF IVKNNFDEPIRVREFGSSEESLLQAGERHHVGFLRSGQAPQLSLSFPGSHHWSAPFKLQD VGQNYVRVPISSSDERLARIDAVLEGPCIFVRLDPEQGAWPFLLRNDSDYPIDFWQAEHD GVQGDGERNKRRRYRLERGSKLPYAWDRPADDIRQFRISCGGRERAVNPLEIGALIPFRF NHEGHTAVISIDVRAEGSTQAVTFSNYVEEDSVFKLQRRNTETISRAESIASSRDAVFEA VDVDVVTTFSLSVNLEGIGISIVNRKMQELIYASFRGVTAKYADSTTNVAYDVGIKWIQI DNQLFGGLYPILLYPSVIPKDSKELEVHPSLQVSAILLKDEAHGVSYFKYASILLQEMTI EVDEDFLFALLDFAKFSGANGMAEQESKLTEDPEEIPEPTATSKGGDLYFEVLHLHPIQL DLSFMRTDRVNVEQKLNSHNPLYFFINALTMALGNVNDAPVRLNALVIENARLSLPVLQE RLTVHYSDEFFGQLYRVLGSADVLGNPVGLFTNVSSGVADFFIQPYDSIMMNGNKDLGIG IARGAGSLAKKTVFGLSDSLTKISGSIGKGLSAATLDKQYQSQRRMRQFRNKPKHALYGV TAGATSFVTSVASGFEGLATKPLEGAEKGGAAGFFKGVGMGLVGAVTKPAVGIFDFANNV TEGIRNTTTVFDQTGIDRVRLPRFTASDGVLRPYSEREALGQNWLKNVENGRYFSETYVA HLDLPSSDDTLVVILTTTRILLVRVNKLKVGWDVPISDLATISLEASGITLVLRGSVPGP FLAIPDQSARLWLFRHLERIVQAHNARRLVE