Protein Info for mRNA_3986 in Rhodosporidium toruloides IFO0880

Name: 12354
Annotation: K01439 dapE succinyl-diaminopimelate desuccinylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 TIGR01910: peptidase, ArgE/DapE family" amino acids 22 to 434 (413 residues), 246.9 bits, see alignment E=1.9e-77 PF01546: Peptidase_M20" amino acids 111 to 436 (326 residues), 117.3 bits, see alignment E=8.2e-38 PF07687: M20_dimer" amino acids 226 to 335 (110 residues), 64.9 bits, see alignment E=6e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>mRNA_3986 K01439 dapE succinyl-diaminopimelate desuccinylase (Rhodosporidium toruloides IFO0880)
MKLLAELEAVKRASHEVLDDCVAFLTRLCQLDTTNPPGINYRECATLIASHLDSLGYETD
LLPVASADLPALAPHAEGHERVNVIGRKKSEAKEPTLVEVAGQKREKTLHFDGHFDVAPI
GDASTWVHPPFGAEIVEVEGGKAMVARGVSDMKGGIAAAIWAVEAVKRAGFKLRGTVENS
GVVDEESTGIRNAGAGWLVEQGHVSPEKVDGVVITEPLNVENVCLGHRGALWATIDFHGV
ASHGATPQRGVNALTHAATFIVRAQEKIVPHLSTLLDSRVIPSEARTASLTFTVLNAGKG
QNSVPDLATLKCDRRLVPGETLDEARRQIHQVLEECQAEMGGPEVFRFDYKEDYSTEPVW
VDEHLELCRIWAASVERAVGQKAGIVCSPGSDDQRFFVRGGIPQTIVYGPGNIKQVHNHD
EHLLLNDLRKAIEVMAIGACGFLGIE