Protein Info for mRNA_3991 in Rhodosporidium toruloides IFO0880

Name: 12359
Annotation: KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1156 transmembrane" amino acids 219 to 237 (19 residues), see Phobius details amino acids 244 to 266 (23 residues), see Phobius details amino acids 451 to 461 (11 residues), see Phobius details amino acids 481 to 500 (20 residues), see Phobius details amino acids 512 to 532 (21 residues), see Phobius details PF00168: C2" amino acids 558 to 655 (98 residues), 61.3 bits, see alignment E=4.8e-21 amino acids 742 to 867 (126 residues), 30 bits, see alignment E=2.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1156 amino acids)

>mRNA_3991 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain (Rhodosporidium toruloides IFO0880)
MSGVNSAPDKLPQIDRKAYDAQIHLPGEGYSGKNKVPTVSAFLARQQAMTEDHSAEGDKL
RALRAQQSQAEQAKRDREGGSVADVSDGAKTDAAAQGKSAGQLEKEEMMKKARANHQPNA
KDFEAQGEREVFDPVTHKMVVIRDAKLEDFQNPKLFDPQNLDPSNLGTGGPSTNPPSGGG
ASIKHTTPLPVEPSNINFFPYPPPVDQNGLKAITRTINSYALAILGGLGVIWFFTAWRAG
WAAFLFRSQIIGAVAVCVFLAHGVVARKIEKELERIRLEMHKQRGMEFSPPTPESVEWLN
AFTKVIWPLINPDMFTSIVDMIEDTLQASLPGFVDAVKIEDMTIGKNAFRILNMRALPDQ
PTDPDYPKEEWIDQGDREAALDPNRRIKKEKKKEEEADEVMKQENPEDEDQTGDYVNYEI
SFAYFAPPGKEKLHGENISLIIKFFLGMHDLFHLPVPIWIAVESIVGTIRLRCQMVSQAP
FIRNVTFTLMGVPAIEASAIPLSRALPNVLDLPLISGFVKSAIAAASSIYVAPKSMTMNI
AQMLAGDGVKRDTSALGVFQITIHHGSGLSAQDDNGSSDPYVVIAYSKFGKPLFSTRIIR
EDLNPVWEQTAFILVSADEVRAAENLSIQLWDSDRVSADDLVGRIQVPITELMLKPNEMQ
HRTDKLMGFEDADEMSGTLTWSVAYYEKAKLNPDLKKEPGIDHSLPKELQDHPQLKIEEN
QQDTPEEADVERTPPDPQYPSGILSVIIHQIQSLERQNLTGATGKHREGQAGQDTDEASE
QNGNLPSAYCEIVVNDDLCYRTRVKQYTTFPFYEAGTELFVRDYTKTSLRVVVRDARLRE
HDPILGIVDLPLQKTLAHASQVTRTYSLQGGVGWGKVNISILFKGVQMSLPKELSGWETG
TVEVKGPIKVEAVAGADFDWREKKLVLSTSEASTKISARAANSNGDGALEWDIDHDIRLP
VYDRYSSALYFDYGGSSVKIGPLGSKRDAFAALWLAELVDDEPKEVRLPVIVAKTPAVRF
NYINDQCQKTHDYEIVGYLTTTVVLDSGLDADHEKYATTQTARHEFEQYDRVEGQVAQAE
TNAHANDDGVIDKEEQKEIDRAHKKALESRHRGKMQFRPYRTAVWAKDGLKDRARGLKDK
LTGGGKKEETIATEGA