Protein Info for mRNA_4010 in Rhodosporidium toruloides IFO0880

Name: 12378
Annotation: HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 916 PF12937: F-box-like" amino acids 99 to 141 (43 residues), 40 bits, see alignment 1.5e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (916 amino acids)

>mRNA_4010 HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MAEVRSEWYGPAAQGSDGEAGTRGVADGPFAASEKGGVPQDALPPSPPMTDQAATSGEGS
PKTPMVDQTPKDTSPRSPGVESEHSGSSASSTKQALSPLPAEVFLNVLTFLQPDDLARMT
RVSSAWRTVINNEPRLWSTLSVALDDDNDMQKASYTCLRACGKNGGRSGAGGIRSLVVRL
RYIEVQHGLCGDIISHEMVKLRLRDLFKAVAWASVRRREQVHALMRFDPPATSTSTLRRV
VLLLHPNTIASAYALHEVAEWASEPLFSALSEVAVQAALPDFILGGRVLSLFPSVSSLDV
KVRMNGRPHQRVPVGEWTWQPRRSVQPVQALPSLDAIHWRNLVVLDLVMPRLPALRTLEL
TSIRWVGRSFFMLLRIARRTLETIHFTDLVIEEPGDPFEDWGDFVDVRDPEFIDDPVPPL
HDHTADVVPAPIRFPALRHLSIKGQTPPLFAPPPSSEVDFDLDVEHFPTPLFIMPALESC
ELVETSFDDDLEYVSEISQLAALGANAPQVKQLILNSIIIDDLAVCACLSNMCGALTYLD
LSESSISDQAILQLPDLVPKLEILDVRLCTEVSCQGVARVVEVVLTRTDSGWSKIKQVFL
DPPTDSWADWQAYYWLDFVGVLGRDEFDFEGDGPAKPPERDHWKKTGKRDPYWQERLAWK
EEHETKIKFFAQATAYRAANGSGSGATSTTVTSPFFHHHDAPPHLPQPSILRLPPLPAVF
APPPASSVTNAFTPQQATYAFPARADYQPPPVVVPQSVWRNAILQPHSAQPQPTQRTAEE
DGDYSYLDTDGGIDGIDPAVIEAQRAELARLSQRRDNRLVAEAESYNAQRRRQQEAREVV
APPVGDVVELHPALISARNGDELAEDEQVDEVLLDAEDEQQPNPQGFAGDTTEDDEDEEA
GTTEWVEAVEVIHRTE