Protein Info for mRNA_4011 in Rhodosporidium toruloides IFO0880

Name: 12379
Annotation: HMMPfam-Retinoic acid induced 16-like protein-PF10257

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 PF10257: RAI16-like" amino acids 80 to 603 (524 residues), 167.2 bits, see alignment E=2.6e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>mRNA_4011 HMMPfam-Retinoic acid induced 16-like protein-PF10257 (Rhodosporidium toruloides IFO0880)
MWSKVAKLASPAPRKTAPPRTPLTAEEVFHQLSNLSKDPSATTSPDGSRDEADRLLDALL
RRLKAEEAEGNVSSRVGPSLEVILRDNPLVQLVELVKGDESSGVREALLRWYGRTATELD
EAWLTHAAVNKPLVALLRHYVETQEVLAPEEEVLVVEAMSSIAERIRTKPELLAIFFRDK
PSTSRRPDLSARINAAMSRSVVGSLPDPPSSPTLSQSAMSDVSRPFSASNTSTMSPRRRA
EHDFVLFSSLLRFIHREGQLGDIARSGILTLVDIALSLSAPYSASFTPLSSSAATLIPPV
AAREAVLSFAEYLLDSDFAEVLGAGLGALYGNLPGKLVVQSADANQADATEGVPSTNGGM
VLGGMGALHDEENAEDVRRRKEEEEARLRAAGYGLSGSTEFREALDNFLKLVEFTQDVLR
LCDSIAASTSENMDDGEDVRQQRLIVNALTLAILDSIRKLFLESVLYPSVLECSEADGSA
VAVLSYIDSILGAVDEGSKLEATILAFLFGEDDSRPLETISPNLRVADPSPSLLLPRKAN
VKRRKSSALLLVERSTKPSSDYFTSDGRCTLRDLLTAHIDSPSPSTSSAALKLFQTLLTK
HDRWSVALLDPVLDASATSFPVTLRQHAATPAAADDVEADESTVSRPTAASPDDESDEED
FVYPTSSPITPTVAGRESVFDKTPAALRSVLRSTCPATPSASLHRDTLDTLLSLIGNIDP
SYRKMRSAGGGSEITTTGFANYLRDAEASLAGDAGFRRGLMASMDEVREASHALERLLWD
RRRTGLFGASRSLTGQECANAKTGYRHKLRPSTKLVALLLDSFSAFFSHPPDVNLALTAV
LAALALSPYRALEGWLLPVVKPSSHALSSDQLLYRGGRLGELSRSDDGDDRSVDHELEER
SRRDALFAPLSPSPNIFTEDAPASATRAALATADCLLAILDALAKSIEQYRSTIPQFDDY
LSQRRQGLFFADNLADALESGNLGAAAVEESAFVPPPSDLPSSLPTTAPKKSPGLGFGAF
FSPRRPAHKRSPSSPNAFATPTRPSQLRRSTSEESLVGPRTPPSRPPAARVSASVRADGQ
QGTASPFAAHYRETGAITVKPVVVATPARTQQSRLALSTSDGDEYDERDSNGPADSPTKH
LSGRSPVASASQGPSSSSATSTSPSAPRSSAKDAAIKPVSLSAILDNVIVLEEFVKEIAA
IVYVRRAIGIDAVSFVD