Protein Info for mRNA_4049 in Rhodosporidium toruloides IFO0880

Name: 12417
Annotation: HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03330: DPBB_1" amino acids 234 to 327 (94 residues), 30.5 bits, see alignment E=3.5e-11 PF00967: Barwin" amino acids 269 to 321 (53 residues), 20.8 bits, see alignment 3e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>mRNA_4049 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 (Rhodosporidium toruloides IFO0880)
MYSQLAVAALAAIASVQAAPLPILATVEAALSTPNATQHNQTAVSYYMNGNNGACGWANQ
DSDKVVGLPNEFYQDLSSVSPYCGKYIVVTDPRVNKTVTALVADASTGNNTLSLSQGSWN
ALNGTASDLKTVDWRFANETETAAAKAALSSPASSSSAAPAPSSTTAAQQQQQKQEQPTS
SSQKQQTTQQAYTTTQAPSTTSYAPKPTTTTTTQAQATQQKASYDSSASSGTYSGQATYF
FQNGVAGACGSVHSDSDYVVAMDSRLYAGGAHCGQTVHITNTKNGKTVTATVADECPTCS
SSGSLDLSQGAFNAIGSESDGVEPITWSFAGSSRARRSLSL