Protein Info for mRNA_4052 in Rhodosporidium toruloides IFO0880

Name: 12420
Annotation: HMMPfam-Transcription factor Opi1-PF08618

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 PF08618: Opi1" amino acids 180 to 268 (89 residues), 59.1 bits, see alignment E=2.6e-20 amino acids 282 to 540 (259 residues), 253.4 bits, see alignment E=2.6e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>mRNA_4052 HMMPfam-Transcription factor Opi1-PF08618 (Rhodosporidium toruloides IFO0880)
MAATAHPVQPSQQPSFAPPPRRHAEPPPREAEQETAQDDSMTDDMKIAISALGLMREGSL
GAGRAHEAAPAMDHDGASTSSVPFPSVGQPPASLDFRATSGLTRGDPSRSTSIASTASAS
EAWTGAGTSDTGYSSPATSASISCAVTDDAEMSEKGLGEAELDAEGAGEEGVNGSEDPRF
MARVSQLPIVSGGLEWYERSKANSRVVKYGAGLVESSFSAVSRPIANTHLGRATDEFACR
QLDRIGAPGASPGRKSPASLHSRQLQPETSPTEEDGQPASQRPRLDQRTSSSSTVAGGAG
GGQVATVPGGQRSRWQTVLLEAGGLGAAVSEESLKSLRYCLQWLLYATAHLDHQIGILRD
FIISLRSHTGGSSSPSSNALVAASASAHLSQIKHDVVETIRKVVEVVSKYAGAALPEQAK
RYVRQSILGLPVKWASAIEGGRRSREGSVSGMSAAGESDIGTPRPERMHESYFPGAAGSS
KGLAGSSSEQTQGGQASADLNPTAEAADRILTFAVESLDMLRSVTGIFGESVERAEAWIE
RLRVVGLDRQRQRQAAADAPSSFSPPAPSTAPALPAPDSVGHSPPASHSATFGSGASSPV
VAGTKRRRATATSTMAPGAEVEGLAWSNGRARTTGVDAGQAADEAEDSGVSRRKRGAWRE
SAENVA